SAXSdb — 9uxl

▼

1. Structure Basics

entry_id	9uxl
deposition_date	2025-05-14
title	type II Lamassu, LmuACB from Vibrio cholerae O1 El
keywords	endonuclease; Structural maintenance of chromosomes (SMC) proteins; DNA BINDING PROTEIN, DNA BINDING PROTEIN; DNA BINDING PROTEIN
method	ELECTRON MICROSCOPY

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	49.07 Å
rg_electron	49.47 Å
i0	643872000.00
molecular_weight	212770.0 kDa
excluded_volume	267700 Å³
envelope_volume	370130 Å³
shell_volume	65087 Å³
envelope_diameter	177.7 Å
shell_rg	50.58 Å
envelope_rg	48.82 Å
shape_rg	49.48 Å
total_rg	49.47 Å
total_atoms	15005
n_residues	1861
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	177.0 Å
rg_real	49.58 Å
rg_real_error	2.37 Å
i0_real	6.4390e+08
i0_real_error	1.4090e+07
rg_reciprocal	49.07 Å
i0_reciprocal	643400000.0000
total_estimate	0.8199
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	44.2 Å
skewness	0.526
kurtosis	-0.232
angular_range	— – 0.1600 Å⁻¹
current_alpha	0.0000
highest_alpha	60070000.0000
n_real_points	33
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.733; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.812; Smooth: 0.642

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (3)

Entity 1 polymer

description	DUF3732 domain-containing protein
formula_weight	74870.2 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,F
atom_count	15005

GSMFFQIEKVVLWSKEAKHKPRVIEFALNKVNLITGSSKSGKSSLIPIIDYCLGSSKCSIPVNTIRDTTAWYGVQIKTKHSRLLIARRDPSNQLSTSNAFFVEAENIEIPQNIEKHNVNIDTVKNRLNEISGVSNISFDFYDTGRIDKKRTSTRDLSAFNYQPQNIIANPNALFYKTDSFEHKSKLVTILPYVLGALSNTDIENQHRIKNLEEEYRKVERRLLKLKRQNEDWLSSAQAYVIKAMELGLVNSDKDIYQLKPERLLNVLKNIATKEIDYSTSAANIKYASEQEAEITKRSRDISNNLAKVKSRLQNINSMNRLANTHSDASRLKRERLSLSKWLLTQNDINSSLFSEPNEIRSLVLEPLARAFSNLEAELEVPIHVQGALSREKIYLEGELTRLASEMKDVNTQLKILRGNKRKLGYDAFSVGKFVGEVEKALSLMGESESESELSKEYKRLKKELSVLRLKIDPREFERKTKLQLAKVNKLASDWLPHLDTENPNAPISLHEKELTITVNSSGREDYLWEIGSGANWLSYHVAITLALHQHFSSLEASPVPNYIIYDQPSQVYFPSKLRHQATPEEDELALLEQDEDIVQVKKIFEAFNGAIEKTKDNLQIIVLDHAPSTLVKSIPKGHLVEEWRNGIKLIPLDWL

Source

organism	Vibrio cholerae
ncbi_taxonomy_id	666
host_organism	Escherichia coli

Entity 2 polymer

description	Lamassu C
formula_weight	19483.7 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	D

GSMLKPENNLEKEAWEINNPAMCSYMLWIATLAYYQKQKEPIHPSRLFCLFPFILYSDTRNVLLSSKGSLKSYLAKFSNSKAISGDIPLSIHFRIDIQKNKTLDALIVAFDSGLLVIDSDSGLIKPNVSIKPLPNSKLTDTIKELVYCSTKIGRWLSEMTNQDLARDLKVIF

Source

organism	Vibrio cholerae
ncbi_taxonomy_id	666
host_organism	Escherichia coli

Entity 3 polymer

description	ABC-three component systems C-terminal domain-containing protein
formula_weight	44584.7 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	C

MKDNSTSAVSSWLGYKIQEYRLTQRLLEANNSSCIGFEILDDLEEHTGSTSTFEQDKISTTGRNIVSNHSKDLWKTLSNWMDLIDSGEIDVDNTIFLLFTNKRCHSEVLQLLSTSQATEEASKAFDEILKIVSHPSPSIANYLNNFSKSKTDACRLISKFTYIYGSGSAPHDLRESYKLHRLGALEEHLDEIMYEILGWVSDVLTLAAEKRQPTIVRAKDFGARLGEIESKYRQKTILNYFCNRSSESEDVQNTIKDAPNYIKQLNLINVDDSELEEAAIANLETKDAVVEWTLNGDVQDYSYRYYQRELRRCWGIQKQKIHLDFNGRPETEVGQRLYIECLNNVTRYYLENKKVGDFFAHGTLHSMADKLTIGWHPEFDKKLGDPDA

Source

organism	Vibrio cholerae
ncbi_taxonomy_id	666
host_organism	Escherichia coli

▶

6. Citations (1)

▶

length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	4.070 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	4.07 Å
resolution_method	—
num_particles	78853

fit	/app/data/saxs_computation/ux/9uxl/9uxl.fit
pddf	/app/data/pr_computation/ux/9uxl/9uxl.pr.out
profile	/app/data/saxs_computation/ux/9uxl/9uxl.dat

type II Lamassu, LmuACB from Vibrio cholerae O1 El

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)