SAXSdb — 9uxh

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1. Structure Basics

entry_id	9uxh
deposition_date	2025-05-14
title	type II Lamassu, LmuACB with DNA
keywords	endonuclease; Structural maintenance of chromosomes (SMC) proteins; DNA BINDING PROTEIN, DNA BINDING PROTEIN; DNA BINDING PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	45.15 Å
rg_electron	45.35 Å
i0	534852000.00
molecular_weight	180030.0 kDa
excluded_volume	221330 Å³
envelope_volume	309270 Å³
shell_volume	59167 Å³
envelope_diameter	170.6 Å
shell_rg	47.07 Å
envelope_rg	45.22 Å
shape_rg	45.37 Å
total_rg	45.38 Å
total_atoms	12615
n_residues	1483
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	159.1 Å
rg_real	45.39 Å
rg_real_error	1.89 Å
i0_real	5.3490e+08
i0_real_error	9.8660e+06
rg_reciprocal	45.15 Å
i0_reciprocal	534700000.0000
total_estimate	0.8496
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	50.0 Å
skewness	0.479
kurtosis	-0.115
angular_range	— – 0.1750 Å⁻¹
current_alpha	0.0000
highest_alpha	36960000.0000
n_real_points	36
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.812; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.889; Smooth: 0.714

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4. Crystallography & Experiment

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5. Entities & Polymer Info (5)

Entity 1 polymer

description	DNA (59-MER)
formula_weight	18214.7 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	A
atom_count	12615

CGCTTTATCAGAAGCCAGACATTAACGCTTCTGGAGAAACTCAACGAGCTGGACGCGGA

Entity 2 polymer

description	DNA (59-MER)
formula_weight	18151.6 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	B

TCCGCGTCCAGCTCGTTGAGTTTCTCCAGAAGCGTTAATGTCTGGCTTCTGATAAAGCG

Entity 3 polymer

description	DUF3732 domain-containing protein
formula_weight	74726.1 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	E,F

MFFQIEKVVLWSKEAKHKPRVIEFALNKVNLITGSSKSGKSSLIPIIDYCLGSSKCSIPVNTIRDTTAWYGVQIKTKHSRLLIARRDPSNQLSTSNAFFVEAENIEIPQNIEKHNVNIDTVKNRLNEISGVSNISFDFYDTGRIDKKRTSTRDLSAFNYQPQNIIANPNALFYKTDSFEHKSKLVTILPYVLGALSNTDIENQHRIKNLEEEYRKVERRLLKLKRQNEDWLSSAQAYVIKAMELGLVNSDKDIYQLKPERLLNVLKNIATKEIDYSTSAANIKYASEQEAEITKRSRDISNNLAKVKSRLQNINSMNRLANTHSDASRLKRERLSLSKWLLTQNDINSSLFSEPNEIRSLVLEPLARAFSNLEAELEVPIHVQGALSREKIYLEGELTRLASEMKDVNTQLKILRGNKRKLGYDAFSVGKFVGEVEKALSLMGESESESELSKEYKRLKKELSVLRLKIDPREFERKTKLQLAKVNKLASDWLPHLDTENPNAPISLHEKELTITVNSSGREDYLWEIGSGANWLSYHVAITLALHQHFSSLEASPVPNYIIYDQPSQVYFPSKLRHQATPEEDELALLEQDEDIVQVKKIFEAFNGAIEKTKDNLQIIVLDHAPSTLVKSIPKGHLVEEWRNGIKLIPLDWL

Source

organism	Vibrio cholerae
ncbi_taxonomy_id	666
host_organism	Escherichia coli

Entity 4 polymer

description	ABC-three component systems C-terminal domain-containing protein
formula_weight	44584.7 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	C

MKDNSTSAVSSWLGYKIQEYRLTQRLLEANNSSCIGFEILDDLEEHTGSTSTFEQDKISTTGRNIVSNHSKDLWKTLSNWMDLIDSGEIDVDNTIFLLFTNKRCHSEVLQLLSTSQATEEASKAFDEILKIVSHPSPSIANYLNNFSKSKTDACRLISKFTYIYGSGSAPHDLRESYKLHRLGALEEHLDEIMYEILGWVSDVLTLAAEKRQPTIVRAKDFGARLGEIESKYRQKTILNYFCNRSSESEDVQNTIKDAPNYIKQLNLINVDDSELEEAAIANLETKDAVVEWTLNGDVQDYSYRYYQRELRRCWGIQKQKIHLDFNGRPETEVGQRLYIECLNNVTRYYLENKKVGDFFAHGTLHSMADKLTIGWHPEFDKKLGDPDA

Source

organism	Vibrio cholerae
ncbi_taxonomy_id	666
host_organism	Escherichia coli

Entity 5 polymer

description	Lamassu C
formula_weight	19339.5 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	D

MLKPENNLEKEAWEINNPAMCSYMLWIATLAYYQKQKEPIHPSRLFCLFPFILYSDTRNVLLSSKGSLKSYLAKFSNSKAISGDIPLSIHFRIDIQKNKTLDALIVAFDSGLLVIDSDSGLIKPNVSIKPLPNSKLTDTIKELVYCSTKIGRWLSEMTNQDLARDLKVIF

Source

organism	Vibrio cholerae
ncbi_taxonomy_id	666
host_organism	Escherichia coli

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.030 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	3.03 Å
resolution_method	—
num_particles	122544

fit	/app/data/saxs_computation/ux/9uxh/9uxh.fit
pddf	/app/data/pr_computation/ux/9uxh/9uxh.pr.out
profile	/app/data/saxs_computation/ux/9uxh/9uxh.dat

type II Lamassu, LmuACB with DNA

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (5)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

Source

Entity 4 polymer

Polymer

Source

Entity 5 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)