Crystal structure of the aromatic prenyltransferase AtaPT(G326W) mutant from Aspergillus terreus

Method: X-RAY DIFFRACTION D_max: 98.4 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9v5f
deposition_date	2025-05-25
last_revision	2026-05-27
title	Crystal structure of the aromatic prenyltransferase AtaPT(G326W) mutant from Aspergillus terreus
keywords	aromatic prenyltransferase, TRANSFERASE; TRANSFERASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	30.20 Å
rg_electron	29.29 Å
i0	115357000.00
molecular_weight	88563.0 kDa
excluded_volume	112240 Å³
envelope_volume	134790 Å³
shell_volume	38439 Å³
envelope_diameter	100.3 Å
shell_rg	36.60 Å
envelope_rg	29.27 Å
shape_rg	29.30 Å
total_rg	29.92 Å
total_atoms	6256
n_residues	795
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	98.4 Å
rg_real	30.24 Å
rg_real_error	0.54 Å
i0_real	1.1540e+08
i0_real_error	1.6530e+06
rg_reciprocal	30.22 Å
i0_reciprocal	115400000.0000
total_estimate	0.8755
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	34.1 Å
skewness	0.420
kurtosis	-0.315
angular_range	— – 0.2600 Å⁻¹
current_alpha	0.0000
highest_alpha	40640000.0000
n_real_points	53
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.852; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.988; Smooth: 0.832

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (1)

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length_a	95.772 Å
length_b	137.388 Å
length_c	69.762 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 21 21 2
int_tables_number	18
crystal_system	orthorhombic

resolution	2.698 Å
resolution_low	68.694 Å
r_factor	0.2123
r_work	0.2095
r_free	0.2457

description	Aromatic prenyltransferase
formula_weight	46613.5 kDa
mutation	G326W
src_method	man
entity_count	2

type	polypeptide(L)
strand_id	A,B
atom_count	6286

Crystal structure of the aromatic prenyltransferase AtaPT(G326W) mutant from Aspergillus terreus

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Aspergillus terreus
ncbi_taxonomy_id	33178
host_organism	Escherichia coli

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	30

fit	/app/data/saxs_computation/v5/9v5f/9v5f.fit
pddf	/app/data/pr_computation/v5/9v5f/9v5f.pr.out
profile	/app/data/saxs_computation/v5/9v5f/9v5f.dat