9vio
;Crystal strcture of adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU from Akkermansia muciniphila, crystal form I ;
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9vio |
| deposition_date | 2025-06-18 |
| last_revision | 2025-10-08 |
| title | ;Crystal strcture of adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU from Akkermansia muciniphila, crystal form I ; |
| keywords | ;VB12, Cobamide remodeling, CobU, adenosylcobinamide kinase, adenosylcobinamide phosphate guanylyltransferase, Akkermansia muciniphila, TRANSFERASE ;; TRANSFERASE |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 25.21 Å |
| rg_electron | 24.18 Å |
| i0 | 49956500.00 |
| molecular_weight | 55423.0 kDa |
| excluded_volume | 69844 ų |
| envelope_volume | 83187 ų |
| shell_volume | 28473 ų |
| envelope_diameter | 79.1 Å |
| shell_rg | 31.60 Å |
| envelope_rg | 24.50 Å |
| shape_rg | 24.20 Å |
| total_rg | 25.02 Å |
| total_atoms | 3893 |
| n_residues | 510 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 77.4 Å |
| rg_real | 25.10 Å |
| rg_real_error | 0.39 Å |
| i0_real | 4.9960e+07 |
| i0_real_error | 7.1930e+05 |
| rg_reciprocal | 25.14 Å |
| i0_reciprocal | 49960000.0000 |
| total_estimate | 0.9105 |
| solution_quality | EXCELLENT a EXCELLENT solution |
| n_peaks | 1 |
| r_peak_primary | 76.2 Å |
| skewness | 0.164 |
| kurtosis | -0.536 |
| angular_range | — – 0.3150 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 11650000.0000 |
| n_real_points | 64 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.954; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.972 |