9vis
;Crystal strcture of adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU from Akkermansia muciniphila in complex with AdoCbi-GDP ;
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9vis |
| deposition_date | 2025-06-18 |
| last_revision | 2025-10-08 |
| title | ;Crystal strcture of adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU from Akkermansia muciniphila in complex with AdoCbi-GDP ; |
| keywords | ;VB12, Cobamide remodeling, CobU, adenosylcobinamide kinase, adenosylcobinamide phosphate guanylyltransferase, Akkermansia muciniphila, TRANSFERASE ;; TRANSFERASE |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 16.90 Å |
| rg_electron | 16.00 Å |
| i0 | 16754000.00 |
| molecular_weight | 20404.0 kDa |
| excluded_volume | 19571 ų |
| envelope_volume | 30824 ų |
| shell_volume | 16011 ų |
| envelope_diameter | 53.5 Å |
| shell_rg | 22.16 Å |
| envelope_rg | 16.30 Å |
| shape_rg | 16.00 Å |
| total_rg | 16.77 Å |
| total_atoms | 1538 |
| n_residues | 185 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 54.0 Å |
| rg_real | 16.79 Å |
| rg_real_error | 0.21 Å |
| i0_real | 1.6750e+07 |
| i0_real_error | 1.7350e+05 |
| rg_reciprocal | 16.81 Å |
| i0_reciprocal | 16750000.0000 |
| total_estimate | 0.8899 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 22.0 Å |
| skewness | 0.143 |
| kurtosis | -0.401 |
| angular_range | — – 0.4700 Å−1 |
| current_alpha | 0.0001 |
| highest_alpha | 4319000.0000 |
| n_real_points | 77 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.857; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.995; Smooth: 0.999 |