9vip
;Crystal strcture of adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU from Akkermansia muciniphila, crystal form II ;
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9vip |
| deposition_date | 2025-06-18 |
| last_revision | 2025-10-08 |
| title | ;Crystal strcture of adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU from Akkermansia muciniphila, crystal form II ; |
| keywords | ;VB12, Cobamide remodeling, CobU, adenosylcobinamide kinase, adenosylcobinamide phosphate guanylyltransferase, Akkermansia muciniphila, TRANSFERASE ;; TRANSFERASE |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 17.41 Å |
| rg_electron | 16.14 Å |
| i0 | 6983400.00 |
| molecular_weight | 19247.0 kDa |
| excluded_volume | 24159 ų |
| envelope_volume | 28737 ų |
| shell_volume | 15070 ų |
| envelope_diameter | 57.9 Å |
| shell_rg | 22.01 Å |
| envelope_rg | 16.54 Å |
| shape_rg | 16.16 Å |
| total_rg | 17.17 Å |
| total_atoms | 1353 |
| n_residues | 178 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 56.2 Å |
| rg_real | 17.31 Å |
| rg_real_error | 0.31 Å |
| i0_real | 6.9830e+06 |
| i0_real_error | 7.0990e+04 |
| rg_reciprocal | 17.32 Å |
| i0_reciprocal | 6983000.0000 |
| total_estimate | 0.6656 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 3 |
| r_peak_primary | 22.5 Å |
| skewness | 0.145 |
| kurtosis | -0.389 |
| angular_range | — – 0.4550 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 1292000.0000 |
| n_real_points | 76 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.854; Stabil: 1.000; Sysdev: 0.363; Positv: 1.000; Valcen: 1.000; Smooth: 0.000 |