UP1 in complex with RNA dinucleotide

entry_id	9vva
deposition_date	2025-07-15
last_revision	2026-01-28
title	UP1 in complex with RNA dinucleotide
keywords	RRM, Ribonucleoprotein, RNA BINDING PROTEIN, RNA BINDING PROTEIN-RNA complex; RNA BINDING PROTEIN/RNA
method	X-RAY DIFFRACTION

rg_guinier	20.06 Å
rg_electron	19.18 Å
i0	9103940.00
molecular_weight	20999.0 kDa
excluded_volume	25802 ų
envelope_volume	31813 ų
shell_volume	15010 ų
envelope_diameter	71.2 Å
shell_rg	23.95 Å
envelope_rg	19.47 Å
shape_rg	19.15 Å
total_rg	20.03 Å
total_atoms	1477
n_residues	181
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	76.4 Å
rg_real	20.19 Å
rg_real_error	0.68 Å
i0_real	9.1040e+06
i0_real_error	1.2110e+05
rg_reciprocal	20.17 Å
i0_reciprocal	9104000.0000
total_estimate	0.7154
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	20.7 Å
skewness	0.553
kurtosis	-0.104
angular_range	— – 0.3950 Å−1
current_alpha	0.0000
highest_alpha	1794000.0000
n_real_points	71
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.542; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.669; Smooth: 0.000

Unit Cell

length_a	36.935 Å
length_b	37.967 Å
length_c	38.599 Å
angle_alpha	64.38 °
angle_beta	67.63 °
angle_gamma	84.78 °
z_pdb	1

Symmetry

space_group	P 1
int_tables_number	1
crystal_system	—

Refinement

resolution	1.750 Å
resolution_low	34.020 Å
r_factor	0.1695
r_work	0.1678
r_free	0.1995

Diffraction

temperature

173.0 K

Files (7)

• pr_distribution /app/data/pr_computation/vv/9vva/pr_distribution.json
• pr_output /app/data/pr_computation/vv/9vva/9vva.pr.out
• pr_plot /app/data/visualization/pr_computation/vv/9vva/9vva_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/vv/9vva/9vva.dat
• saxs_fit /app/data/saxs_computation/vv/9vva/9vva.fit
• saxs_log /app/data/saxs_computation/vv/9vva/9vva.log
• saxs_plot /app/data/visualization/saxs_computation/vv/9vva/9vva_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/vv/9vva/9vva.fit
pddf	/app/data/pr_computation/vv/9vva/9vva.pr.out
profile	/app/data/saxs_computation/vv/9vva/9vva.dat