SAXSdb — 9wah

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1. Structure Basics

entry_id	9wah
deposition_date	2025-08-12
title	Yeast-expressed polio type 1 stabilized virus-like particles
keywords	Poliovirus type 1, virus-like particles, compact state, VIRAL PROTEIN, VIRUS LIKE PARTICLE; VIRUS LIKE PARTICLE
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	30.25 Å
rg_electron	29.25 Å
i0	127713000.00
molecular_weight	88995.0 kDa
excluded_volume	111240 Å³
envelope_volume	145400 Å³
shell_volume	40487 Å³
envelope_diameter	104.4 Å
shell_rg	37.13 Å
envelope_rg	29.94 Å
shape_rg	29.23 Å
total_rg	30.04 Å
total_atoms	6263
n_residues	802
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	97.6 Å
rg_real	30.18 Å
rg_real_error	0.68 Å
i0_real	1.2770e+08
i0_real_error	1.8680e+06
rg_reciprocal	30.21 Å
i0_reciprocal	127700000.0000
total_estimate	0.8919
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	37.5 Å
skewness	0.297
kurtosis	-0.334
angular_range	— – 0.2600 Å⁻¹
current_alpha	0.0000
highest_alpha	30070000.0000
n_real_points	53
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.890; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.920

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	Capsid protein VP1
formula_weight	33451.6 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	J
atom_count	6263

GLGQMLESMIDNTVRETVGAATSRDALPNTEASGPTHSKEIPALTAVETGATNPLVPSDTVQTRHVVQHRSRSESSIESFFARGACVTIMTVDNSASTTNKDKLFAVWKITYKDTVQLRRKLEFFTYSRFDMELTFVVTANFTETNNGHALNQVYQIMYVPPGAPVPEKWDDYTWQTSSNPSIFYTYGTAPARISLPYVGISNAYSHFYDGFSKVPLKDQSAALGDSLYGAASLNDFGILAVRVVNDPNPTKVTSKIRVYLKPKHIRVWCPRPPRAVAYYGPGVDYKDGTLTPLSTKDLTTY

Source

organism	Poliovirus 1
ncbi_taxonomy_id	12080
host_organism	Komagataella pastoris

Entity 2 polymer

description	Capsid protein VP3
formula_weight	26550.5 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	I

GLPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEIDTMIPFDLSATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTFMFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRLTIDDSFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQKALAQ

Source

organism	Poliovirus 1
ncbi_taxonomy_id	12080
host_organism	Komagataella pastoris

Entity 3 polymer

description	Capsid protein VP2
formula_weight	30059.8 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	H

SPNIEACGYSDRVLQLTLGNSTITAQEAANSVVAYGRWPEYLRDSEANPVDQPTEPEVAACRFYTLDTVSWTKESRGWWWKLPDALRDMGLFGQNMYYHYLGRSGYTVHVQCNASKFHQGALGVFAVPEMCLAGDSNTTTMHTSYQNANPGEKGGTFTGTFTPDNNQTSPARRFCPVDYLLGNGTLLGNAFVFPHQIINLRTNNCATLVLPYVNSLSIDSMVKHNNWGIAILPLAPLNFASESSPEIPITLTIAPMCCEFNGLRNITLPRLQ

Source

organism	Poliovirus 1
ncbi_taxonomy_id	12080
host_organism	Komagataella pastoris

Entity 4 polymer

description	Capsid protein VP4
formula_weight	7424.1 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	F

MGAQVSSQKVGAHENSNGAYGGSTINYTTINYYRDSASNAASKQDFSQDPSKFTEPIKDVLIKTAPMLN

Source

organism	Poliovirus 1
ncbi_taxonomy_id	12080
host_organism	Komagataella pastoris

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	2.43 Å
resolution_method	—
num_particles	48710

fit	/app/data/saxs_computation/wa/9wah/9wah.fit
pddf	/app/data/pr_computation/wa/9wah/9wah.pr.out
profile	/app/data/saxs_computation/wa/9wah/9wah.dat

Yeast-expressed polio type 1 stabilized virus-like particles

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 polymer

Polymer

Source

Entity 4 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)