SAXSdb — 9wum

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1. Structure Basics

entry_id	9wum
deposition_date	2025-09-18
title	A ternary complex of NUT with BAK1 and SCREW2
keywords	Complex, PLANT PROTEIN; PLANT PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	33.81 Å
rg_electron	33.13 Å
i0	129777000.00
molecular_weight	91561.0 kDa
excluded_volume	115070 Å³
envelope_volume	154730 Å³
shell_volume	39403 Å³
envelope_diameter	113.6 Å
shell_rg	39.34 Å
envelope_rg	32.73 Å
shape_rg	33.11 Å
total_rg	33.71 Å
total_atoms	6441
n_residues	793
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	107.5 Å
rg_real	33.81 Å
rg_real_error	1.06 Å
i0_real	1.2980e+08
i0_real_error	2.1420e+06
rg_reciprocal	33.81 Å
i0_reciprocal	129800000.0000
total_estimate	0.8922
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	32.0 Å
skewness	0.287
kurtosis	-0.543
angular_range	— – 0.2350 Å⁻¹
current_alpha	0.0000
highest_alpha	51350000.0000
n_real_points	48
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.935; Stabil: 0.996; Sysdev: 1.000; Positv: 1.000; Valcen: 0.971; Smooth: 0.829

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4. Crystallography & Experiment

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5. Entities & Polymer Info (5)

Entity 1 polymer

description	AT5G25930 protein
formula_weight	70216.5 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	6441

MAFKSIAVLSACIIVGSALPGSQFNDQSTLLNLKRDLGDPPSLRLWNNTSSPCNWSEITCTAGNVTGINFKNQNFTGTVPTTICDLSNLNFLDLSFNYFAGEFPTVLYNCTKLQYLDLSQNLLNGSLPVDIDRLSPELDYLDLAANGFSGDIPKSLGRISKLKVLNLYQSEYDGTFPSEIGDLSELEELRLALNDKFTPAKIPIEFGKLKKLKYMWLEEMNLIGEISPVVFENMTDLEHVDLSVNNLTGRIPDVLFGLKNLTEFYLFANGLTGEIPKSISATNLVFLDLSANNLTGSIPVSIGNLTKLQVLNLFNNKLTGEIPPVIGKLPGLKEFKIFNNKLTGEIPAEIGVHSKLERFEVSENQLTGKLPENLCKGGKLQGVVVYSNNLTGEIPESLGDCGTLLTVQLQNNDFSGKFPSRIWNASSMYSLQVSNNSFTGELPENVAWNMSRIEIDNNRFSGEIPKKIGTWSSLVEFKAGNNQFSGEFPKELTSLSNLISIFLDENDLTGELPDEIISWKSLITLSLSKNKLSGEIPRALGLLPRLLNLDLSENQFSGGIPPEIGSLKLTTFNVSSNRLTGGIPEQLDNLAYERSFLNNSNLCADNPVLSLPDCRKQRRGSRGFPGKILEHHHHHH

Source

organism	Arabidopsis thaliana
common_name	thale cress
ncbi_taxonomy_id	3702
host_organism	Trichoplusia ni

Entity 2 polymer

description	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
formula_weight	24873.4 kDa
ec_number	2.7.10.1,2.7.11.1
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	C

MERRLMIPCFFWLILVLDLVLRVSGNAEGDALSALKNSLADPNKVLQSWDATLVTPCTWFHVTCNSDNSVTRVDLGNANLSGQLVMQLGQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDLYLNNLSGPIPSTLGRLKKLRFLRLNNNSLSGEIPRSLTAVLTLQVLDLSNNPLTGDIPVNGSFSLFTPISFANTKLTPLPASPPPPISPTPPSPAGSLEHHHHHH

Source

organism	Arabidopsis thaliana
common_name	thale cress
ncbi_taxonomy_id	3702
host_organism	Trichoplusia ni

Entity 3 polymer

description	Transmembrane protein
formula_weight	2357.6 kDa
src_method	syn
entity_count	1

Polymer

type	polypeptide(L)
strand_id	B

GPVRGSGRNGCTNIPRGSGRCHN

Entity 4 branched

description	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
formula_weight	424.4 kDa
src_method	man
entity_count	4

Entity 5 non-polymer

description	2-acetamido-2-deoxy-beta-D-glucopyranose
formula_weight	221.2 kDa
src_method	syn
entity_count	15

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.48 Å
resolution_method	—
num_particles	45725

fit	/app/data/saxs_computation/wu/9wum/9wum.fit
pddf	/app/data/pr_computation/wu/9wum/9wum.pr.out
profile	/app/data/saxs_computation/wu/9wum/9wum.dat

A ternary complex of NUT with BAK1 and SCREW2

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (5)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 polymer

Polymer

Entity 4 branched

Entity 5 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)