9xtd

E.coli delta lepA 30S ribosomal subunit class B, body domain

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Small ribosomal subunit protein uS4

OrganismNot specified

UniProt P0A7V8

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 1 RNA (1128-MER) × 1 Small ribosomal subunit protein uS5 × 1 (P0A7W3) Small ribosomal subunit protein bS6, non-modified isoform × 1 (P02358) Small ribosomal subunit protein uS8 × 1 (P0A7W7) Small ribosomal subunit protein uS11 × 1 (P0A7R9) Small ribosomal subunit protein uS12 × 1 (P0A7S3) Small ribosomal subunit protein uS15 × 1 (P0ADZ4) 30S ribosomal protein S16 × 1 (P0A7T3) Small ribosomal subunit protein uS17 × 1 (P0AG63) Small ribosomal subunit protein bS18 × 1 (P0A7T7) Small ribosomal subunit protein bS20 × 1 (P0A7U7) Small ribosomal subunit protein uS2 × 1 (P0A7V0) MAGNESIUM ION × 39 water × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RS4_ECOLI
Isoform —
PDB entities 2
Chains and sequence ranges Author chain D; PDBConstruct 1–205; UniProt 2–206

Small ribosomal subunit protein uS5

OrganismNot specified

UniProt P0A7W3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 1 RNA (1128-MER) × 1 Small ribosomal subunit protein uS4 × 1 (P0A7V8) Small ribosomal subunit protein bS6, non-modified isoform × 1 (P02358) Small ribosomal subunit protein uS8 × 1 (P0A7W7) Small ribosomal subunit protein uS11 × 1 (P0A7R9) Small ribosomal subunit protein uS12 × 1 (P0A7S3) Small ribosomal subunit protein uS15 × 1 (P0ADZ4) 30S ribosomal protein S16 × 1 (P0A7T3) Small ribosomal subunit protein uS17 × 1 (P0AG63) Small ribosomal subunit protein bS18 × 1 (P0A7T7) Small ribosomal subunit protein bS20 × 1 (P0A7U7) Small ribosomal subunit protein uS2 × 1 (P0A7V0) MAGNESIUM ION × 39 water × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RS5_ECO57
Isoform —
PDB entities 3
Chains and sequence ranges Author chain E; PDBConstruct 1–157; UniProt 10–166

Small ribosomal subunit protein bS6, non-modified isoform

OrganismNot specified

UniProt P02358

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 1 RNA (1128-MER) × 1 Small ribosomal subunit protein uS4 × 1 (P0A7V8) Small ribosomal subunit protein uS5 × 1 (P0A7W3) Small ribosomal subunit protein uS8 × 1 (P0A7W7) Small ribosomal subunit protein uS11 × 1 (P0A7R9) Small ribosomal subunit protein uS12 × 1 (P0A7S3) Small ribosomal subunit protein uS15 × 1 (P0ADZ4) 30S ribosomal protein S16 × 1 (P0A7T3) Small ribosomal subunit protein uS17 × 1 (P0AG63) Small ribosomal subunit protein bS18 × 1 (P0A7T7) Small ribosomal subunit protein bS20 × 1 (P0A7U7) Small ribosomal subunit protein uS2 × 1 (P0A7V0) MAGNESIUM ION × 39 water × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RS6_ECOLI
Isoform —
PDB entities 4
Chains and sequence ranges Author chain F; PDBConstruct 1–106; UniProt 1–106

Small ribosomal subunit protein uS8

OrganismNot specified

UniProt P0A7W7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 1 RNA (1128-MER) × 1 Small ribosomal subunit protein uS4 × 1 (P0A7V8) Small ribosomal subunit protein uS5 × 1 (P0A7W3) Small ribosomal subunit protein bS6, non-modified isoform × 1 (P02358) Small ribosomal subunit protein uS11 × 1 (P0A7R9) Small ribosomal subunit protein uS12 × 1 (P0A7S3) Small ribosomal subunit protein uS15 × 1 (P0ADZ4) 30S ribosomal protein S16 × 1 (P0A7T3) Small ribosomal subunit protein uS17 × 1 (P0AG63) Small ribosomal subunit protein bS18 × 1 (P0A7T7) Small ribosomal subunit protein bS20 × 1 (P0A7U7) Small ribosomal subunit protein uS2 × 1 (P0A7V0) MAGNESIUM ION × 39 water × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RS8_ECOLI
Isoform —
PDB entities 5
Chains and sequence ranges Author chain H; PDBConstruct 1–129; UniProt 2–130

Small ribosomal subunit protein uS11

OrganismNot specified

UniProt P0A7R9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 1 RNA (1128-MER) × 1 Small ribosomal subunit protein uS4 × 1 (P0A7V8) Small ribosomal subunit protein uS5 × 1 (P0A7W3) Small ribosomal subunit protein bS6, non-modified isoform × 1 (P02358) Small ribosomal subunit protein uS8 × 1 (P0A7W7) Small ribosomal subunit protein uS12 × 1 (P0A7S3) Small ribosomal subunit protein uS15 × 1 (P0ADZ4) 30S ribosomal protein S16 × 1 (P0A7T3) Small ribosomal subunit protein uS17 × 1 (P0AG63) Small ribosomal subunit protein bS18 × 1 (P0A7T7) Small ribosomal subunit protein bS20 × 1 (P0A7U7) Small ribosomal subunit protein uS2 × 1 (P0A7V0) MAGNESIUM ION × 39 water × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RS11_ECOLI
Isoform —
PDB entities 6
Chains and sequence ranges Author chain K; PDBConstruct 1–117; UniProt 13–129

Small ribosomal subunit protein uS12

OrganismNot specified

UniProt P0A7S3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 1 RNA (1128-MER) × 1 Small ribosomal subunit protein uS4 × 1 (P0A7V8) Small ribosomal subunit protein uS5 × 1 (P0A7W3) Small ribosomal subunit protein bS6, non-modified isoform × 1 (P02358) Small ribosomal subunit protein uS8 × 1 (P0A7W7) Small ribosomal subunit protein uS11 × 1 (P0A7R9) Small ribosomal subunit protein uS15 × 1 (P0ADZ4) 30S ribosomal protein S16 × 1 (P0A7T3) Small ribosomal subunit protein uS17 × 1 (P0AG63) Small ribosomal subunit protein bS18 × 1 (P0A7T7) Small ribosomal subunit protein bS20 × 1 (P0A7U7) Small ribosomal subunit protein uS2 × 1 (P0A7V0) MAGNESIUM ION × 39 water × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RS12_ECOLI
Isoform —
PDB entities 7
Chains and sequence ranges Author chain L; PDBConstruct 1–123; UniProt 2–124

Small ribosomal subunit protein uS15

OrganismNot specified

UniProt P0ADZ4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 1 RNA (1128-MER) × 1 Small ribosomal subunit protein uS4 × 1 (P0A7V8) Small ribosomal subunit protein uS5 × 1 (P0A7W3) Small ribosomal subunit protein bS6, non-modified isoform × 1 (P02358) Small ribosomal subunit protein uS8 × 1 (P0A7W7) Small ribosomal subunit protein uS11 × 1 (P0A7R9) Small ribosomal subunit protein uS12 × 1 (P0A7S3) 30S ribosomal protein S16 × 1 (P0A7T3) Small ribosomal subunit protein uS17 × 1 (P0AG63) Small ribosomal subunit protein bS18 × 1 (P0A7T7) Small ribosomal subunit protein bS20 × 1 (P0A7U7) Small ribosomal subunit protein uS2 × 1 (P0A7V0) MAGNESIUM ION × 39 water × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RS15_ECOLI
Isoform —
PDB entities 8
Chains and sequence ranges Author chain O; PDBConstruct 1–88; UniProt 2–89

30S ribosomal protein S16

OrganismNot specified

UniProt P0A7T3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 1 RNA (1128-MER) × 1 Small ribosomal subunit protein uS4 × 1 (P0A7V8) Small ribosomal subunit protein uS5 × 1 (P0A7W3) Small ribosomal subunit protein bS6, non-modified isoform × 1 (P02358) Small ribosomal subunit protein uS8 × 1 (P0A7W7) Small ribosomal subunit protein uS11 × 1 (P0A7R9) Small ribosomal subunit protein uS12 × 1 (P0A7S3) Small ribosomal subunit protein uS15 × 1 (P0ADZ4) Small ribosomal subunit protein uS17 × 1 (P0AG63) Small ribosomal subunit protein bS18 × 1 (P0A7T7) Small ribosomal subunit protein bS20 × 1 (P0A7U7) Small ribosomal subunit protein uS2 × 1 (P0A7V0) MAGNESIUM ION × 39 water × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RS16_ECOLI
Isoform —
PDB entities 9
Chains and sequence ranges Author chain P; PDBConstruct 1–82; UniProt 1–82

Small ribosomal subunit protein uS17

OrganismNot specified

UniProt P0AG63

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 1 RNA (1128-MER) × 1 Small ribosomal subunit protein uS4 × 1 (P0A7V8) Small ribosomal subunit protein uS5 × 1 (P0A7W3) Small ribosomal subunit protein bS6, non-modified isoform × 1 (P02358) Small ribosomal subunit protein uS8 × 1 (P0A7W7) Small ribosomal subunit protein uS11 × 1 (P0A7R9) Small ribosomal subunit protein uS12 × 1 (P0A7S3) Small ribosomal subunit protein uS15 × 1 (P0ADZ4) 30S ribosomal protein S16 × 1 (P0A7T3) Small ribosomal subunit protein bS18 × 1 (P0A7T7) Small ribosomal subunit protein bS20 × 1 (P0A7U7) Small ribosomal subunit protein uS2 × 1 (P0A7V0) MAGNESIUM ION × 39 water × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RS17_ECOLI
Isoform —
PDB entities 10
Chains and sequence ranges Author chain Q; PDBConstruct 1–80; UniProt 4–83

Small ribosomal subunit protein bS18

OrganismNot specified

UniProt P0A7T7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 1 RNA (1128-MER) × 1 Small ribosomal subunit protein uS4 × 1 (P0A7V8) Small ribosomal subunit protein uS5 × 1 (P0A7W3) Small ribosomal subunit protein bS6, non-modified isoform × 1 (P02358) Small ribosomal subunit protein uS8 × 1 (P0A7W7) Small ribosomal subunit protein uS11 × 1 (P0A7R9) Small ribosomal subunit protein uS12 × 1 (P0A7S3) Small ribosomal subunit protein uS15 × 1 (P0ADZ4) 30S ribosomal protein S16 × 1 (P0A7T3) Small ribosomal subunit protein uS17 × 1 (P0AG63) Small ribosomal subunit protein bS20 × 1 (P0A7U7) Small ribosomal subunit protein uS2 × 1 (P0A7V0) MAGNESIUM ION × 39 water × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RS18_ECOLI
Isoform —
PDB entities 11
Chains and sequence ranges Author chain R; PDBConstruct 1–55; UniProt 20–74

Small ribosomal subunit protein bS20

OrganismNot specified

UniProt P0A7U7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 1 RNA (1128-MER) × 1 Small ribosomal subunit protein uS4 × 1 (P0A7V8) Small ribosomal subunit protein uS5 × 1 (P0A7W3) Small ribosomal subunit protein bS6, non-modified isoform × 1 (P02358) Small ribosomal subunit protein uS8 × 1 (P0A7W7) Small ribosomal subunit protein uS11 × 1 (P0A7R9) Small ribosomal subunit protein uS12 × 1 (P0A7S3) Small ribosomal subunit protein uS15 × 1 (P0ADZ4) 30S ribosomal protein S16 × 1 (P0A7T3) Small ribosomal subunit protein uS17 × 1 (P0AG63) Small ribosomal subunit protein bS18 × 1 (P0A7T7) Small ribosomal subunit protein uS2 × 1 (P0A7V0) MAGNESIUM ION × 39 water × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RS20_ECOLI
Isoform —
PDB entities 12
Chains and sequence ranges Author chain T; PDBConstruct 1–86; UniProt 2–87

Small ribosomal subunit protein uS2

OrganismNot specified

UniProt P0A7V0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 1 RNA (1128-MER) × 1 Small ribosomal subunit protein uS4 × 1 (P0A7V8) Small ribosomal subunit protein uS5 × 1 (P0A7W3) Small ribosomal subunit protein bS6, non-modified isoform × 1 (P02358) Small ribosomal subunit protein uS8 × 1 (P0A7W7) Small ribosomal subunit protein uS11 × 1 (P0A7R9) Small ribosomal subunit protein uS12 × 1 (P0A7S3) Small ribosomal subunit protein uS15 × 1 (P0ADZ4) 30S ribosomal protein S16 × 1 (P0A7T3) Small ribosomal subunit protein uS17 × 1 (P0AG63) Small ribosomal subunit protein bS18 × 1 (P0A7T7) Small ribosomal subunit protein bS20 × 1 (P0A7U7) MAGNESIUM ION × 39 water × 9 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RS2_ECOLI
Isoform —
PDB entities 13
Chains and sequence ranges Author chain B; PDBConstruct 1–224; UniProt 4–227

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9xtd
Deposition date deposition_date2025-11-22
Structure title titleE.coli delta lepA 30S ribosomal subunit class B, body domain
Keywords keywords30S subunit maturation, LepA, cryo-EM, ribosome assembly, RIBOSOME; RIBOSOME
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9xtd__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9xtd__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9xtd__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)57.02 Å
Rg (electron density)57.44 Å
Total Rg57.49 Å
Atom count35638
Residues2574
Excluded volume545210 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9xtd__assembly_1__model_1 tridecameric (13) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (15)

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7. Citations (1)