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9y42

Structure of naked mole-rat ribosome with P/E tRNA and eEF2 (rotated)

Method: ELECTRON MICROSCOPY Dmax: 238.7 Å Quality: EXCELLENT

SAXS Profile

SAXS profile for 9y42

P(r) Distribution

P(r) distribution for 9y42
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1. Structure Basics

entry_id9y42
deposition_date2025-09-02
titleStructure of naked mole-rat ribosome with P/E tRNA and eEF2 (rotated)
keywordsNaked mole rat ribosome, RIBOSOME; RIBOSOME
methodELECTRON MICROSCOPY
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Download Data

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2. SAXS Parameters (CRYSOL)

rg_guinier93.48 Å
rg_electron94.14 Å
i0313991000000.00
molecular_weight3329700.0 kDa
excluded_volume3566900 ų
envelope_volume5732300 ų
shell_volume459030 ų
envelope_diameter322.0 Å
shell_rg111.60 Å
envelope_rg93.52 Å
shape_rg94.12 Å
total_rg94.22 Å
total_atoms225387
n_residues18408
n_harmonics20
q_range— – 0.5000 Å−1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3
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3. P(r) Analysis (GNOM)

dmax238.7 Å
rg_real90.74 Å
rg_real_error0.34 Å
i0_real3.0080e+11
i0_real_error4.9550e+09
rg_reciprocal95.27 Å
i0_reciprocal315800000000.0000
total_estimate0.9140
solution_quality EXCELLENT a EXCELLENT solution
n_peaks1
r_peak_primary112.3 Å
skewness0.102
kurtosis-0.597
angular_range— – 0.0850 Å−1
current_alpha0.7045
highest_alpha20190000000.0000
n_real_points18
gnom_version4.1.3
quality_criteria AN1: 0.000; Oscil: 0.997; Stabil: 0.973; Sysdev: 1.000; Positv: 1.000; Valcen: 0.978; Smooth: 0.000
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4. Crystallography & Experiment

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5. Entities & Polymer Info (87)

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6. Citations (1)

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7. Files & Curves (10)