9ydx
RBM3 domain of FliF protein in MS-ring of flagellar motor in Vibrio cholerae
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9ydx |
| deposition_date | 2025-09-23 |
| title | RBM3 domain of FliF protein in MS-ring of flagellar motor in Vibrio cholerae |
| keywords | In situ cryo-EM, sheathed flagellar motor, Vibrio cholerae, MS-ring, FliF, assembled state, MOTOR PROTEIN; MOTOR PROTEIN |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 83.61 Å |
| rg_electron | 84.29 Å |
| i0 | 4377160000.00 |
| molecular_weight | 547430.0 kDa |
| excluded_volume | 680400 ų |
| envelope_volume | 1418300 ų |
| shell_volume | 148010 ų |
| envelope_diameter | 231.0 Å |
| shell_rg | 86.00 Å |
| envelope_rg | 73.74 Å |
| shape_rg | 84.22 Å |
| total_rg | 84.56 Å |
| total_atoms | 38556 |
| n_residues | 4896 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 217.5 Å |
| rg_real | 83.19 Å |
| rg_real_error | 0.93 Å |
| i0_real | 4.3760e+09 |
| i0_real_error | 7.8170e+07 |
| rg_reciprocal | 84.47 Å |
| i0_reciprocal | 4388000000.0000 |
| total_estimate | 0.8459 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 1 |
| r_peak_primary | 137.4 Å |
| skewness | -0.120 |
| kurtosis | -0.871 |
| angular_range | — – 0.0950 Å−1 |
| current_alpha | 0.0025 |
| highest_alpha | 117700000.0000 |
| n_real_points | 20 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.998; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.000 |