9yhm
Crystal structure of Chikungunya virus nsP3 macrodomain N24A D31N double mutant (P31 crystal form)
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9yhm |
| deposition_date | 2025-09-30 |
| last_revision | 2025-11-26 |
| title | Crystal structure of Chikungunya virus nsP3 macrodomain N24A D31N double mutant (P31 crystal form) |
| keywords | Chikungunya virus, ADP-ribose, AViDD, Advanced Light Source 8.3.1, VIRAL PROTEIN, HYDROLASE; VIRAL PROTEIN,HYDROLASE |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 30.27 Å |
| rg_electron | 29.37 Å |
| i0 | 84284800.00 |
| molecular_weight | 70201.0 kDa |
| excluded_volume | 87163 ų |
| envelope_volume | 113270 ų |
| shell_volume | 32864 ų |
| envelope_diameter | 101.7 Å |
| shell_rg | 36.00 Å |
| envelope_rg | 28.87 Å |
| shape_rg | 29.37 Å |
| total_rg | 30.01 Å |
| total_atoms | 9800 |
| n_residues | 642 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 95.3 Å |
| rg_real | 30.18 Å |
| rg_real_error | 0.65 Å |
| i0_real | 8.4280e+07 |
| i0_real_error | 1.2930e+06 |
| rg_reciprocal | 30.22 Å |
| i0_reciprocal | 84290000.0000 |
| total_estimate | 0.9036 |
| solution_quality | EXCELLENT a EXCELLENT solution |
| n_peaks | 2 |
| r_peak_primary | 44.0 Å |
| skewness | 0.151 |
| kurtosis | -0.594 |
| angular_range | — – 0.2600 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 27480000.0000 |
| n_real_points | 53 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.932; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.994; Smooth: 0.952 |