SAXSdb — 9ynv

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1. Structure Basics

entry_id	9ynv
deposition_date	2025-10-12
title	Histone Acetyl Transferase (HAT) module of ctSAGA
keywords	ctSAGA complex, Histone Acetyl Transferase (HAT) Module, Tra1 module and Core module, TRANSCRIPTION; TRANSCRIPTION
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	51.24 Å
rg_electron	51.61 Å
i0	306645000.00
molecular_weight	143310.0 kDa
excluded_volume	178920 Å³
envelope_volume	283010 Å³
shell_volume	48833 Å³
envelope_diameter	181.0 Å
shell_rg	50.44 Å
envelope_rg	50.15 Å
shape_rg	51.58 Å
total_rg	51.64 Å
total_atoms	20058
n_residues	1249
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	180.6 Å
rg_real	51.65 Å
rg_real_error	2.23 Å
i0_real	3.0660e+08
i0_real_error	6.0160e+06
rg_reciprocal	50.87 Å
i0_reciprocal	306300000.0000
total_estimate	0.7483
solution_quality	REASONABLE a REASONABLE solution
n_peaks	1
r_peak_primary	35.0 Å
skewness	0.443
kurtosis	-0.668
angular_range	— – 0.1550 Å⁻¹
current_alpha	0.0000
highest_alpha	20060000.0000
n_real_points	32
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.566; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.410; Smooth: 0.618

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	Putative transcriptional coactivator HFI1 protein
formula_weight	52133.4 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	H
atom_count	20058

MVDINPAALSRPSIGLSTPSFPGKSGSINVSVPSSASASASASSAHSKPQKTSLVPPRIDLEPIYTALKAAIGAEQWPVYKETLTNFLIGRLNQAELSERIDPILASQDGQKEHLHNQLIAAIYANVTREMPDPGLAPWVSANDKPTTAQTKPVTGDANERRLKGEVMQLPARDRRRIKELAHNDFDPYDALANVLMEHARAKPPKIAEPPASAGGLKMNFDLEIRKRYAQPLAVESGEFPDTSNIESRMLPFCYEAGLSSGHAPDAAQFMSIATETFIKEVMSAIFSRTRSNGPGDSGSAGFGLGSGWIQTHRYRKQLAKEEEAFQRGEISRDKMGLLPVEAKAASERGPLGMADVRLALEMGDCGLAGFPVIVKSVIYGWREGELENWEDYTYVDPSRPDGIAIPSRGDGDVEMGGVGVNGVVKGEPEPQQQPLANGVHDVDAMDIDGVSVAGGAANEIWWEGAEPETSDLLNAVLDSCLAVN

Entity 2 polymer

description	histone acetyltransferase
formula_weight	46983.7 kDa
ec_number	2.3.1.48
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	N

MTSENGKRKATEEPGSPSAAKRIKQEPSETDKDKKEENKDKKTVAKPPPIPYPEKPAVIEERNGEIEFRVVNNDGERESLIILTGLKCIFQKQLPKMPKDYIARLVYDRTHLSIAIVKKPLEVVGGITYRPFKNRKFAEIVFCAISSDQQVKGYGAHLMSHLKDYVKATTNIEHFLTYADNYAIGYFKKQGFTKEITLDKSVWMGYIKDYEGGTIMQCTMIPRIRYLEQGRMLLKQKECVQAKIRAFSKSHIVHPPPKQWRNGNVTPIDPLSIDAIRESGWSPDMDELARQPRHGPNYNQLLHLLNDMQNHASSWPFLVPVNKDEVVDYYDIIKEPMDLSTMESKLEADQYQTPEDFIRDAKLIFDNCRKYNNENTPYAKSANKLEKFMWQQIRQIPEWSHLEPS

Entity 3 polymer

description	Transcriptional adapter 2
formula_weight	58866.1 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	M

MGVIRKKIAGRSGEGGVKYICDVCSVDITSTVRIRCADPACHDYDLCVPCFANGSSSNAHKPATHSFRVIEQNSFPIFDPDWGADEELLLLEGAEIYGLGSWADIADHIGGYRTKDEVRDHYLKVYIESPNFPLPERCSPYDLELPNSISREEFQARKKRRIEERREAAKNAPPPQPKTKPTASIPACHEIQGYMPGRLEFETEYCNEAEEAVQLMSFDPGDGINPRTGELEPEMELKLTVMEIYNNRLTQRVERKKVIFEHNLLEYRENTKAEKKRSREERELLNKAKPFARMMNRHDFEQFCQGLIDELNLRQAIAQLQEWRSMRIGDLKSGEKYEQEKALRIQKSMPMGSLDRERLATSQRGKNQQQPEPPSGAALLVAPELPARYKEPIIDANGFPRPDANRLTVDGGSVVVANGTSQPKPKYVPPPVPGVQPMNLTQDNAPDLHLLTPEEIKLCETLRIQPKPYIMIKEQILKEAVKGNGSLKKKQAKEICRLDSQKGGRIFDFMVNAGWVVKA

Entity 4 polymer

description	Uncharacterized protein
formula_weight	79972.2 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	O

MAPSSSQKGTGKKAGSAASAIRSHQQHSQQQRSRNTTPGPAGIPPTSSTSVSVSVASLPPIETVETETLDLRFDTFRNVTFEDLVDPAAASALIPDSKSLDGIISRLQRLADIIEKRGANCDRGMRLLAQTRRQRLDELAVERGREEERRQAEADDEKKANKKKRKADSLAPGAVNTERSSPNRESTSKARKLDRDDTASSSLSPAAAGTPSNMDVDDKDKEKDKDKTKAEADSDSDSDDGAPPPPPRPPANVFGDDPSTFPDPTVYEIRPVLPGMSEEEIKEIYSVASYPKSDLAHLTCGEPPDRDFSNSKPTNQINFSTFSSYIEPYFRPFTEEDLAFLRERGDRVTPFIMPKRGKKHYTEIWAEEDGAMAIDSSPPGGRDRLPPNQARGSIDNMDDEVAETDKLSVGPLLTRLLQAMRPENRAPTADDKSGPNGTSGDGDGPQQSFDFNDSTAAPNPSQSQPNGVNGVAATTNGDSQQQQQQQQHQSLPPATFMPESNTEAWKKATHPKLDYNQVDERIKQELRHIGFLPLPPSSATDPSNSSASVTPAAPPPPGTTATTAEYDGHYDDEVAARLRVLQARLREQILLNGARKARLTELVKERMAYQEYQTILEDLDAQVNAAYLKRTRTMGKKPKKNRPGQHSSGSAAAAAAAAAGMARPGIGDLARTLMDRRRRWIEQIGAVFDDEGITKCPRVEDGDTSIFGREIMAELIKREKEAWDEEVEEE

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	triclinic

resolution	3.70 Å
resolution_method	—
num_particles	627924

fit	/app/data/saxs_computation/yn/9ynv/9ynv.fit
pddf	/app/data/pr_computation/yn/9ynv/9ynv.pr.out
profile	/app/data/saxs_computation/yn/9ynv/9ynv.dat

Histone Acetyl Transferase (HAT) module of ctSAGA

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

Entity 4 polymer

Polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)