SAXSdb — 9yzy

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1. Structure Basics

entry_id	9yzy
deposition_date	2025-10-30
title	ctSAGA Focused on HAT Bromodomain region
keywords	ctSAGA complex, Histone Acetyl Transferase (HAT) Module, Tra1 module and Core module, TRANSCRIPTION; TRANSCRIPTION
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	38.55 Å
rg_electron	38.42 Å
i0	172876000.00
molecular_weight	104260.0 kDa
excluded_volume	129920 Å³
envelope_volume	189550 Å³
shell_volume	44149 Å³
envelope_diameter	148.5 Å
shell_rg	41.02 Å
envelope_rg	38.32 Å
shape_rg	38.42 Å
total_rg	38.60 Å
total_atoms	14542
n_residues	903
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	140.9 Å
rg_real	38.92 Å
rg_real_error	1.59 Å
i0_real	1.7290e+08
i0_real_error	3.2150e+06
rg_reciprocal	38.69 Å
i0_reciprocal	172800000.0000
total_estimate	0.8332
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	41.2 Å
skewness	0.555
kurtosis	-0.065
angular_range	— – 0.2050 Å⁻¹
current_alpha	0.0000
highest_alpha	27420000.0000
n_real_points	42
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.711; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.817; Smooth: 0.879

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	histone acetyltransferase
formula_weight	46983.7 kDa
ec_number	2.3.1.48
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	N
atom_count	14542

MTSENGKRKATEEPGSPSAAKRIKQEPSETDKDKKEENKDKKTVAKPPPIPYPEKPAVIEERNGEIEFRVVNNDGERESLIILTGLKCIFQKQLPKMPKDYIARLVYDRTHLSIAIVKKPLEVVGGITYRPFKNRKFAEIVFCAISSDQQVKGYGAHLMSHLKDYVKATTNIEHFLTYADNYAIGYFKKQGFTKEITLDKSVWMGYIKDYEGGTIMQCTMIPRIRYLEQGRMLLKQKECVQAKIRAFSKSHIVHPPPKQWRNGNVTPIDPLSIDAIRESGWSPDMDELARQPRHGPNYNQLLHLLNDMQNHASSWPFLVPVNKDEVVDYYDIIKEPMDLSTMESKLEADQYQTPEDFIRDAKLIFDNCRKYNNENTPYAKSANKLEKFMWQQIRQIPEWSHLEPS

Entity 2 polymer

description	Transcriptional adapter 2
formula_weight	58866.1 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	M

MGVIRKKIAGRSGEGGVKYICDVCSVDITSTVRIRCADPACHDYDLCVPCFANGSSSNAHKPATHSFRVIEQNSFPIFDPDWGADEELLLLEGAEIYGLGSWADIADHIGGYRTKDEVRDHYLKVYIESPNFPLPERCSPYDLELPNSISREEFQARKKRRIEERREAAKNAPPPQPKTKPTASIPACHEIQGYMPGRLEFETEYCNEAEEAVQLMSFDPGDGINPRTGELEPEMELKLTVMEIYNNRLTQRVERKKVIFEHNLLEYRENTKAEKKRSREERELLNKAKPFARMMNRHDFEQFCQGLIDELNLRQAIAQLQEWRSMRIGDLKSGEKYEQEKALRIQKSMPMGSLDRERLATSQRGKNQQQPEPPSGAALLVAPELPARYKEPIIDANGFPRPDANRLTVDGGSVVVANGTSQPKPKYVPPPVPGVQPMNLTQDNAPDLHLLTPEEIKLCETLRIQPKPYIMIKEQILKEAVKGNGSLKKKQAKEICRLDSQKGGRIFDFMVNAGWVVKA

Entity 3 polymer

description	ctAda3
formula_weight	79972.2 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	O

MAPSSSQKGTGKKAGSAASAIRSHQQHSQQQRSRNTTPGPAGIPPTSSTSVSVSVASLPPIETVETETLDLRFDTFRNVTFEDLVDPAAASALIPDSKSLDGIISRLQRLADIIEKRGANCDRGMRLLAQTRRQRLDELAVERGREEERRQAEADDEKKANKKKRKADSLAPGAVNTERSSPNRESTSKARKLDRDDTASSSLSPAAAGTPSNMDVDDKDKEKDKDKTKAEADSDSDSDDGAPPPPPRPPANVFGDDPSTFPDPTVYEIRPVLPGMSEEEIKEIYSVASYPKSDLAHLTCGEPPDRDFSNSKPTNQINFSTFSSYIEPYFRPFTEEDLAFLRERGDRVTPFIMPKRGKKHYTEIWAEEDGAMAIDSSPPGGRDRLPPNQARGSIDNMDDEVAETDKLSVGPLLTRLLQAMRPENRAPTADDKSGPNGTSGDGDGPQQSFDFNDSTAAPNPSQSQPNGVNGVAATTNGDSQQQQQQQQHQSLPPATFMPESNTEAWKKATHPKLDYNQVDERIKQELRHIGFLPLPPSSATDPSNSSASVTPAAPPPPGTTATTAEYDGHYDDEVAARLRVLQARLREQILLNGARKARLTELVKERMAYQEYQTILEDLDAQVNAAYLKRTRTMGKKPKKNRPGQHSSGSAAAAAAAAAGMARPGIGDLARTLMDRRRRWIEQIGAVFDDEGITKCPRVEDGDTSIFGREIMAELIKREKEAWDEEVEEE

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	triclinic

resolution	4.40 Å
resolution_method	—
num_particles	384825

fit	/app/data/saxs_computation/yz/9yzy/9yzy.fit
pddf	/app/data/pr_computation/yz/9yzy/9yzy.pr.out
profile	/app/data/saxs_computation/yz/9yzy/9yzy.dat

ctSAGA Focused on HAT Bromodomain region

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)