SAXSdb — 9yol

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1. Protein Identity and Related Structures Protein Identity & Related Structures

SCA7 domain-containing protein

OrganismNot specified

State in the Current Structure

Assembly	Oligomeric State	Construct	Mutations and Modifications	Ligands, Ions and Associated Components	Method and Experimental Conditions	Structure Quality
1	Protein heterocomplex Heteromer Protein × 6 PDB declaration: hexameric（6） Consistent with protein copy count	Chain Q； UniProt 1–1273	Not recorded	Spt20-like SEP domain-containing protein × 1 （G0RYM2） Chains: C × 1 （G0S660） Putative transcriptional coactivator HFI1 protein × 1 （G0SED0） Transcription initiation factor TFIID subunit 12 × 1 （G0S2A1） Non-specific serine/threonine protein kinase × 1 （G0S842）	ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE	Resolution 2.60 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB	Difference from Current Entry 9YOL	Assembly / Oligomeric State	Construct	Mutations and Modifications	Ligands, Ions and Non-polymers	Method and Experimental Conditions	Structure Quality
9YNU Tra1 and core modules including core tip of ctSAGA complex Deposited 2025-10-12	Different oligomeric state Different structure-quality metrics	Assembly 1 Protein heterocomplex Heteromer；Protein × 11 PDB declaration: undecameric	Chain Q 1–1273（1273 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 7.5 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 3.20 Å
9YNW Tra1, Core and minimal HAT modules of ctSAGA, composite. Deposited 2025-10-12	Different oligomeric state Different structure-quality metrics	Assembly 1 Protein heterocomplex Heteromer；Protein × 14 PDB declaration: tetradecameric	Chain Q 1–1273（1273 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 7.5 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 3.50 Å
9YOQ Core module of ctSAGA Deposited 2025-10-13	Different oligomeric state	Assembly 1 Protein heterocomplex Heteromer；Protein × 11 PDB declaration: undecameric	Chain Q 1–1273（1273 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 7.5 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 2.60 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence

UniProt name	G0S6A1_CHATD
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain Q； PDBConstruct 1–1273； UniProt 1–1273

Spt20-like SEP domain-containing protein

OrganismNot specified

UniProt G0RYM2

State in the Current Structure

Assembly	Oligomeric State	Construct	Mutations and Modifications	Ligands, Ions and Associated Components	Method and Experimental Conditions	Structure Quality
1	Protein heterocomplex Heteromer Protein × 6 PDB declaration: hexameric（6） Consistent with protein copy count	Chain B； UniProt 1–1192	Not recorded	SCA7 domain-containing protein × 1 （G0S6A1） Chains: C × 1 （G0S660） Putative transcriptional coactivator HFI1 protein × 1 （G0SED0） Transcription initiation factor TFIID subunit 12 × 1 （G0S2A1） Non-specific serine/threonine protein kinase × 1 （G0S842）	ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE	Resolution 2.60 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB	Difference from Current Entry 9YOL	Assembly / Oligomeric State	Construct	Mutations and Modifications	Ligands, Ions and Non-polymers	Method and Experimental Conditions	Structure Quality
9YNU Tra1 and core modules including core tip of ctSAGA complex Deposited 2025-10-12	Different oligomeric state Different structure-quality metrics	Assembly 1 Protein heterocomplex Heteromer；Protein × 11 PDB declaration: undecameric	Chain B 1–1192（1192 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 7.5 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 3.20 Å
9YNW Tra1, Core and minimal HAT modules of ctSAGA, composite. Deposited 2025-10-12	Different oligomeric state Different structure-quality metrics	Assembly 1 Protein heterocomplex Heteromer；Protein × 14 PDB declaration: tetradecameric	Chain B 1–1192（1192 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 7.5 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 3.50 Å
9YOQ Core module of ctSAGA Deposited 2025-10-13	Different oligomeric state	Assembly 1 Protein heterocomplex Heteromer；Protein × 11 PDB declaration: undecameric	Chain B 1–1192（1192 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 7.5 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 2.60 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence

UniProt name	G0RYM2_CHATD
Isoform	—
PDB entities	2
Chains and sequence ranges	Author chain B； PDBConstruct 1–1192； UniProt 1–1192

Chains: C

OrganismNot specified

UniProt G0S660

State in the Current Structure

Assembly	Oligomeric State	Construct	Mutations and Modifications	Ligands, Ions and Associated Components	Method and Experimental Conditions	Structure Quality
1	Protein heterocomplex Heteromer Protein × 6 PDB declaration: hexameric（6） Consistent with protein copy count	Chain C； UniProt 1–433	Not recorded	SCA7 domain-containing protein × 1 （G0S6A1） Spt20-like SEP domain-containing protein × 1 （G0RYM2） Putative transcriptional coactivator HFI1 protein × 1 （G0SED0） Transcription initiation factor TFIID subunit 12 × 1 （G0S2A1） Non-specific serine/threonine protein kinase × 1 （G0S842）	ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE	Resolution 2.60 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB	Difference from Current Entry 9YOL	Assembly / Oligomeric State	Construct	Mutations and Modifications	Ligands, Ions and Non-polymers	Method and Experimental Conditions	Structure Quality
9YNU Tra1 and core modules including core tip of ctSAGA complex Deposited 2025-10-12	Different oligomeric state Different structure-quality metrics	Assembly 1 Protein heterocomplex Heteromer；Protein × 11 PDB declaration: undecameric	Chain C 1–433（433 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 7.5 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 3.20 Å
9YNW Tra1, Core and minimal HAT modules of ctSAGA, composite. Deposited 2025-10-12	Different oligomeric state Different structure-quality metrics	Assembly 1 Protein heterocomplex Heteromer；Protein × 14 PDB declaration: tetradecameric	Chain C 1–433（433 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 7.5 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 3.50 Å
9YOQ Core module of ctSAGA Deposited 2025-10-13	Different oligomeric state	Assembly 1 Protein heterocomplex Heteromer；Protein × 11 PDB declaration: undecameric	Chain C 1–433（433 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 7.5 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 2.60 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence

UniProt name	G0S660_CHATD
Isoform	—
PDB entities	3
Chains and sequence ranges	Author chain C； PDBConstruct 1–433； UniProt 1–433

Putative transcriptional coactivator HFI1 protein

OrganismNot specified

UniProt G0SED0

State in the Current Structure

Assembly	Oligomeric State	Construct	Mutations and Modifications	Ligands, Ions and Associated Components	Method and Experimental Conditions	Structure Quality
1	Protein heterocomplex Heteromer Protein × 6 PDB declaration: hexameric（6） Consistent with protein copy count	Chain H； UniProt 1–485	Not recorded	SCA7 domain-containing protein × 1 （G0S6A1） Spt20-like SEP domain-containing protein × 1 （G0RYM2） Chains: C × 1 （G0S660） Transcription initiation factor TFIID subunit 12 × 1 （G0S2A1） Non-specific serine/threonine protein kinase × 1 （G0S842）	ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE	Resolution 2.60 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB	Difference from Current Entry 9YOL	Assembly / Oligomeric State	Construct	Mutations and Modifications	Ligands, Ions and Non-polymers	Method and Experimental Conditions	Structure Quality
9YNU Tra1 and core modules including core tip of ctSAGA complex Deposited 2025-10-12	Different oligomeric state Different structure-quality metrics	Assembly 1 Protein heterocomplex Heteromer；Protein × 11 PDB declaration: undecameric	Chain H 1–485（485 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 7.5 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 3.20 Å
9YNV Histone Acetyl Transferase (HAT) module of ctSAGA Deposited 2025-10-12	Different oligomeric state Different structure-quality metrics	Assembly 1 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric	Chain H 1–485（485 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 7.5 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 3.70 Å
9YNW Tra1, Core and minimal HAT modules of ctSAGA, composite. Deposited 2025-10-12	Different oligomeric state Different structure-quality metrics	Assembly 1 Protein heterocomplex Heteromer；Protein × 14 PDB declaration: tetradecameric	Chain H 1–485（485 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 7.5 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 3.50 Å
9YOQ Core module of ctSAGA Deposited 2025-10-13	Different oligomeric state	Assembly 1 Protein heterocomplex Heteromer；Protein × 11 PDB declaration: undecameric	Chain H 1–485（485 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 7.5 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 2.60 Å

4 other PDB entries and 4 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence

UniProt name	G0SED0_CHATD
Isoform	—
PDB entities	4
Chains and sequence ranges	Author chain H； PDBConstruct 1–485； UniProt 1–485

Transcription initiation factor TFIID subunit 12

OrganismNot specified

UniProt G0S2A1

State in the Current Structure

Assembly	Oligomeric State	Construct	Mutations and Modifications	Ligands, Ions and Associated Components	Method and Experimental Conditions	Structure Quality
1	Protein heterocomplex Heteromer Protein × 6 PDB declaration: hexameric（6） Consistent with protein copy count	Chain I； UniProt 1–770	Not recorded	SCA7 domain-containing protein × 1 （G0S6A1） Spt20-like SEP domain-containing protein × 1 （G0RYM2） Chains: C × 1 （G0S660） Putative transcriptional coactivator HFI1 protein × 1 （G0SED0） Non-specific serine/threonine protein kinase × 1 （G0S842）	ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE	Resolution 2.60 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB	Difference from Current Entry 9YOL	Assembly / Oligomeric State	Construct	Mutations and Modifications	Ligands, Ions and Non-polymers	Method and Experimental Conditions	Structure Quality
9YNU Tra1 and core modules including core tip of ctSAGA complex Deposited 2025-10-12	Different oligomeric state Different structure-quality metrics	Assembly 1 Protein heterocomplex Heteromer；Protein × 11 PDB declaration: undecameric	Chain I 1–770（770 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 7.5 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 3.20 Å
9YNW Tra1, Core and minimal HAT modules of ctSAGA, composite. Deposited 2025-10-12	Different oligomeric state Different structure-quality metrics	Assembly 1 Protein heterocomplex Heteromer；Protein × 14 PDB declaration: tetradecameric	Chain I 1–770（770 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 7.5 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 3.50 Å
9YOQ Core module of ctSAGA Deposited 2025-10-13	Different oligomeric state	Assembly 1 Protein heterocomplex Heteromer；Protein × 11 PDB declaration: undecameric	Chain I 1–770（770 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 7.5 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 2.60 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence

UniProt name	G0S2A1_CHATD
Isoform	—
PDB entities	5
Chains and sequence ranges	Author chain I； PDBConstruct 1–770； UniProt 1–770

Non-specific serine/threonine protein kinase

OrganismNot specified

UniProt G0S842

State in the Current Structure

Assembly	Oligomeric State	Construct	Mutations and Modifications	Ligands, Ions and Associated Components	Method and Experimental Conditions	Structure Quality
1	Protein heterocomplex Heteromer Protein × 6 PDB declaration: hexameric（6） Consistent with protein copy count	Chain A； UniProt 1–3893	Not recorded	SCA7 domain-containing protein × 1 （G0S6A1） Spt20-like SEP domain-containing protein × 1 （G0RYM2） Chains: C × 1 （G0S660） Putative transcriptional coactivator HFI1 protein × 1 （G0SED0） Transcription initiation factor TFIID subunit 12 × 1 （G0S2A1）	ELECTRON MICROSCOPY cryo-EM buffer：pH 7.5 cryo-EM vitrification conditions：Cryogen ETHANE	Resolution 2.60 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB	Difference from Current Entry 9YOL	Assembly / Oligomeric State	Construct	Mutations and Modifications	Ligands, Ions and Non-polymers	Method and Experimental Conditions	Structure Quality
9YNU Tra1 and core modules including core tip of ctSAGA complex Deposited 2025-10-12	Different oligomeric state Different structure-quality metrics	Assembly 1 Protein heterocomplex Heteromer；Protein × 11 PDB declaration: undecameric	Chain A 1–3893（3893 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 7.5 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 3.20 Å
9YNW Tra1, Core and minimal HAT modules of ctSAGA, composite. Deposited 2025-10-12	Different oligomeric state Different structure-quality metrics	Assembly 1 Protein heterocomplex Heteromer；Protein × 14 PDB declaration: tetradecameric	Chain A 1–3893（3893 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 7.5 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 3.50 Å
9YOQ Core module of ctSAGA Deposited 2025-10-13	Different oligomeric state	Assembly 1 Protein heterocomplex Heteromer；Protein × 11 PDB declaration: undecameric	Chain A 1–3893（3893 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 7.5 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 2.60 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence

UniProt name	G0S842_CHATD
Isoform	—
PDB entities	6
Chains and sequence ranges	Author chain A； PDBConstruct 1–3893； UniProt 1–3893

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	9yol
Deposition date deposition_date	2025-10-13
Structure title title	Tra1 module of ctSAGA
Keywords keywords	ctSAGA complex, Histone Acetyl Transferase (HAT) Module, Tra1 module and Core module, TRANSCRIPTION; TRANSCRIPTION
Experimental Method method	ELECTRON MICROSCOPY

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3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier	60.74 Å
Radius of gyration Rg (electron density) rg_electron	60.62 Å
Forward intensity I(0) i0	2671750000.00
Molecular weight molecular_weight	446890.0 kDa
Excluded volume excluded_volume	564180 Å³
Envelope volume envelope_volume	892510 Å³
Hydration-shell volume shell_volume	120490 Å³
Envelope diameter envelope_diameter	204.0 Å
Shell Rg shell_rg	65.21 Å
Envelope Rg envelope_rg	58.82 Å
Shape Rg shape_rg	60.61 Å
Total Rg total_rg	60.79 Å
Total atoms total_atoms	62724
Residues n_residues	3884
Spherical-harmonic order n_harmonics	20
q range q_range	— – 0.5000 Å⁻¹
Data points n_points	101
Shell type shell_type	directional
Solvent electron density solvent_density	0.3340 e/Å³
Shell contrast contrast_shell	0.0300 e/Å³
CRYSOL version crysol_version	4.1.3

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4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax	202.2 Å
Rg (real space) rg_real	60.75 Å
Rg uncertainty (real space) rg_real_error	1.78 Å
I(0) (real space) i0_real	2.6720e+09
I(0) uncertainty (real space) i0_real_error	5.8710e+07
Rg (reciprocal space) rg_reciprocal	60.71 Å
I(0) (reciprocal space) i0_reciprocal	2671000000.0000
Solution quality estimate total_estimate	0.8623
Solution quality rating solution_quality	GOOD a GOOD solution
P(r) peaks n_peaks	1
Primary peak position r_peak_primary	70.0 Å
Skewness Skewness skewness	0.307
Kurtosis Kurtosis kurtosis	-0.456
Angular range angular_range	— – 0.1300 Å⁻¹
Current regularization parameter α current_alpha	0.0001
Highest regularization parameter α highest_alpha	246800000.0000
Real-space data points n_real_points	27
GNOM version gnom_version	4.1.3
Quality Criteria quality_criteria	AN1: 0.000; Oscil: 0.905; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.988; Smooth: 0.504

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5. Crystallography and Experiment 5. Crystallography & Experiment

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6. Entities and Polymers Entities & Polymers (6)

Entity 1 Entity 1 polymer

Description description	SCA7 domain-containing protein
Molecular weight formula_weight	137082.7 kDa
Source method src_method	nat
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	Q
Atom count atom_count	62724

MDSRKDEEATIKVAPAKGTVLASKPHIWGKLKLKKPPVKQIKPGNWKEATLVEDKKKDKDGGAINAASPGPDVNQLDDRARDTFSNGRPLEDVLELLQCKLCRKGISRTAARDHIAKCLQIKKEKAQRKKEAREARERLKEAAREEEARRLEEEGAAKGDDDSDDDDGKEGAGKAGKKTKKTDVAGKKRKAEGELDKGKAKKKKDEPKPKVAKPKGPVDVERQCGVPLPNGQLCARSLTCKSHSMSAKRAVPGRSLPYDMLLAAYQKKNQAKQQKAALDANAPLEDEDDLNAGAVDSDEETAAVMSALANWNPQPVVPQPVFAPLKRQYQLARLHEQLQAATNGGRTNIFKVVGFGAQRLSDGHLGLYDAEDAPGEPDPVGLGSLSRRSSSIVAGEDDTTQQAQIAAVDHESQKEDAPLAEVCKKPCWKPKDRPGSVLDQEYVPMSGRSLSKVTKLKATGRAAANRQPKQSRRAASAIPESSKPLADAPVNTIVSKSSPALPTATPLYAFANLPTTDLRLQPAELAIQEMRKRLIAASSSSQSSISSTGVRAPRGRKRKEDRSMPGIHGSQPMENIHRATDGVRQTPENMAPTPKESPSDSTVEMRVLELGQLLAQEDSLAKSSPVLPNTPVVSLLGTSQNGATNGLKQGVQHIQRQMATKPTSVSRAISHSPMSSRPLFSAPSPPMMSHSLSPLTRAATPKALSSSPLVMSMLLPQQPPSHPFVSLPSGSTLSQAMQQSPIMTSMSKSGLTPAATRQPSPGVMPHSPPPRQGPGRPPKPRPADPVSPVNPTRSPNLPNASYLTTLGDLSTGMQPPQLPHMPQQQVPRVKLNQMRNQALASTFSPRPSYLPSQRLDPIREQAIKRAAERAAGLRMAQAQRQPQMQVHMNVQAQRTPQLQARTSPPTASPAETQGQMLSARAQAEDQGQNRLRMGQPQANTQLMRIDGPGMAAGMRQPIGNSQMDTMQPQRQVMNTPVVPAPQSSSPPSAERSSSQPQPVRDQIDSASVQAEAAQDETMNLDNDEMDDILREVKAQAEREAERQMAALSRTRPQAQQQAQNLRSTQNQSQMHALSPVASESSSPSLVMSASLPGLNEVNVRATVAAAAKKVAGSISPVANISSAATALSSPLDCRPYTTTSIPRPRLATTAPVPLMGATGPPAASGTTQNIGSFHVQQHRQRRQQQQLLQQHAQQHQQRLQQAAVHNNQQPFRFTYPAESMAAAVAIAGAHNLRPVVPLPPQAYLLSASQGGGRSGSRGSNIRNGSQARTQEQG

Entity 2 Entity 2 polymer

Description description	Spt20-like SEP domain-containing protein
Molecular weight formula_weight	128449.4 kDa
Source method src_method	nat
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	B

MAPTVTAAAPPVNPPSATKVKRPIPPGIQTNGVAPSRSSPSPSMAAKRAPSAVRQPSNPPSAGGTTPGATRPTIRIRRDPGPGPPLGRGQRSAGLRSASIATDPVTSPTFDAPPYVITPEYILKKFAGHPPSLIVHLYQNHFRFDQQEGMFQYKSPMRIFIEHLRNRTVPHEIMEYLIQGGVPFYEGCLIVQVFDHRTVNQTKEAAKPSSESSKTVPFSIHNHNPYITPSPYVPYPKEDTPADGSQTPASEKPSEDKDKENMPAPPVPADGQKAKGEPAKPTVYTVVLMPTAQALHTDLLLKTVTPRGASDSGGPPPTPHTAGPPPTPTAAGMPPPAKKQKRDHMELDPKNIYEVEAKILLATYPKLDLEPTKNAEETIAKLEKLAHPEHSHKPPEPKVRKRTVAEVAHDEALAAEQERYMLTLDERLSSKLAGAQAGANGADGDGQAPSASWEPRFERFKLIENIKQEHAEKKEQERIKQAEQERKLLQQKQEAAILQARQQQAEMERKRQEQIVLQQRQEAQRRLQQAQAAPVAQAQAQAQAQAQAQAQAQAQAQARAQARAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAAQAQAQAQAQAQAQAQAQAQAQAQAQAQQAATAATMGQTPHAHPMQPSPLPAGMTAGMPVSMAQQAQARFSQVSQPQQMSSPIVQQGTPQAASSPMPPMAAVAMQHSNSNMGQAGSPPRPPSVVQNHPMGVPMAPSMSARGSQQSHAAGTPRVPSATPNIPHATPITRPQVVPTPRMTQASPPAGVMTPTPQQMGQAMLMNNQGIAQMPNVNINSLAAAQQMAAQQRLIQQYQQQLQQSGMVPGNVQANMLQQQLAARQQMMIQQQLLAQQQQRAGQMMNPNIQAQLAAQYQQSLNNMQQQQLAQMNPMQAAHMRQLLAAQQAQRQGMMGVNVNVNGMTPQQLAVMQQQIQLQQQAQLIQQQQQQQQQLQQQQQQQQQQQQQQQQQQQQQQQQQAAQQQPQPGMPGHPPQAAVAPTAPQVPIAQLQPPQNQLAALMMNPAVQNQIRNHSNALYSKNLPALAERFGGNAQNIPPEALAEFRQKCLNQAKVQVLSMLQQQQAGGRLAAGLPPQVQAAQVQAMQQQAQALAVAQAQVQAAQQAAAAQAAQQQGGMGQGM

Entity 3 Entity 3 polymer

Description description	Chains: C
Molecular weight formula_weight	48541.5 kDa
Source method src_method	nat
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	C

MALSDNNPEEVDGMFLSNLRSDLELEEIWRMLQSGVTSPEDSQPTVSLDASSSGDKTMSSESQVALQDDADDELLVSILAGKVPLSELLANDNELLQSDGLSSAVCSADSDQEEDDNNDAGYGEEPDPRDVIANWFELCQMMYVSGETGEPSLETTGIIEDIVRQQVIEIIRHDAPKVSRLRTFLAWKDVRKNVKDSDDKGADADIAPGDDPVGAVVPGATVDDTARKTKKSRVGLPWEPASFYSVEVPEREDEEDEEEEEMNYITLQRLRKADERTKAMTKEEYVTWSEFRQASFTYRKGKRFREWAGFGLVTDSKPSDDIIDILGFLTFEMVQTLTEEALKIKEQEDLHRERTGENQSNANNPNGSANSSLSKKRKLTGGGGLFDPPNEGRTPVEPRHIQEAFRRLQQRPKKARAMLNGTKLQQRTQLKLF

Entity 4 Entity 4 polymer

Description description	Putative transcriptional coactivator HFI1 protein
Molecular weight formula_weight	52133.4 kDa
Source method src_method	nat
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	H

MVDINPAALSRPSIGLSTPSFPGKSGSINVSVPSSASASASASSAHSKPQKTSLVPPRIDLEPIYTALKAAIGAEQWPVYKETLTNFLIGRLNQAELSERIDPILASQDGQKEHLHNQLIAAIYANVTREMPDPGLAPWVSANDKPTTAQTKPVTGDANERRLKGEVMQLPARDRRRIKELAHNDFDPYDALANVLMEHARAKPPKIAEPPASAGGLKMNFDLEIRKRYAQPLAVESGEFPDTSNIESRMLPFCYEAGLSSGHAPDAAQFMSIATETFIKEVMSAIFSRTRSNGPGDSGSAGFGLGSGWIQTHRYRKQLAKEEEAFQRGEISRDKMGLLPVEAKAASERGPLGMADVRLALEMGDCGLAGFPVIVKSVIYGWREGELENWEDYTYVDPSRPDGIAIPSRGDGDVEMGGVGVNGVVKGEPEPQQQPLANGVHDVDAMDIDGVSVAGGAANEIWWEGAEPETSDLLNAVLDSCLAVN

Entity 5 Entity 5 polymer

Description description	Transcription initiation factor TFIID subunit 12
Molecular weight formula_weight	83091.2 kDa
Source method src_method	nat
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	I

MNQTPAQGQGQGQPGQGMANRPPNAPSAANVAAPGGAPRQQGTPMYRPEMMRNIPLLSDEEKTKYERGLQQLWLMHDNTAPGSAENIEAKKKIAEFGRVLLTKLQQRRQQQQLQQQRQQQQQQQQQQQQQQQQQQQVQQQMQQQAQQPQTQPQQGQPQQQLQQAQVQQQVQQQQQIPQQQQQAPQQQQQQQQPQQLGQPGQQVQMMPQNQQPQVAQNVQPVAPTTVPQQQPAPATQTAPNQMGAPNSAAAQLRSLPAHIVSHVKDVTFLAPNNVVDKAGWIDQLKLQYAQKLFVMDSAGRQIKQIAASLADQSLPPEERKKLEEKKQTLEKQYNDAISFANTVRKQYMQKPAQNGAAVQNAANVARPQSAQGASAMTQPGAGVGNGTPVAAPVNPMQSSAAAINTAIETAKKQQMAAGRMAGAVNAMAAQVQSPATPVQAQVSPATQVHATQQSVPQQPQQIQQAQPTQQPQAQVKIEPGTAPHPAPLNTTMAGPTGVPSAAAPAQNAARMQTPTSATPTSANPNIRPLTHAAAMNLASQQRPGMPAVPTAASGAAPGTPMGIMGAAQQQQQQQPGHSHAHPPQPTQAPPPHSTNPKLPIPKVLHDKAIQMPQPVPNIGGAGSGRPTYTSGVMNQPALPKTPAFQLEGEGERVLNKKKLDELVRQVCGGTAEGQDGNMLTPEVEESVLNMADAFVDNVLHQACRNAKERGSKVLEIRDIQLVLERVYNIRIPGYASEELRTVRKVQPNSNWIKKMSAVQAAKVVPGKGDI

Entity 6 Entity 6 polymer

Description description	Non-specific serine/threonine protein kinase
Molecular weight formula_weight	444670.1 kDa
Source method src_method	nat
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	A

MATSLIEDVVKKLSVAETGTGNSLSERSLLVLPLMQVSCYTELKVKAEAACALRDSLDHYTAGPAYPAFLKKVMPVFIHILRQQPVFQTTGEQGHMQKLRNCILEILHRLPTSQTPPEHFEPYAHEIVDLLLELVRTDNEDNVILCVKILSDIMRHQHKIMSGKVQTFLNLIQELFEQLDKVVRDQLDNTSTTGPPGPPSTPGSTQSSFLPHQQSPRPGSPVTTGVTDFGADANQQANRLLPRGMYSFKVLAECPIIVVSIFQVHRSAVTPNVKAFVPLIKSALLCQAKAQDQAHREAAARGTIHIGVSPNIKNRAAFGDFITAQVKTMSFLAYLLRQYSSQLSDFLPHLPDIIVRLLRDCPRDKSSARKELFVAIRHIINFNFRKIFLPKIDELLDERTLVGDGLTVHETMRPLAYSMLADLIHHVRDQLSPEQIRKTVEVYTRNLQDNFPGTSFQTMSAKLLLNMAECIARLPNKVDARHYLIMILNAIADKFAAMNRQYPNAVKLSKQYAQQAAKNVPETYLADKENPPDWDEIDIFNATPIKISNPRDRAADPVVDNKFLFRNLMTGLKNTFYQLKSCNIPGAVDLTGAPAHWTDVAYGFTAEEVKVIAKLFREGAYVFRYYEIEKPAAESPYSSPVEYMANFYMVSSSKEEKELLETFATVFHCIDPATFHEVFQQEIPRLYEMIHEHTALLHIPQFFLASEATSPSFCGILLRFLMERIEDVGSADIKKSSILLRLFKLAFMAVTLFANQNEQVLLPHVVDIVTKSIELSTKAEEPMNYFLLLRSLFRSIGGGKFEHLYKQILPLLEMLLDVLNNLLMAARKPAERDLYVELCLTVPARLSNLLPHLSFLMRPLVVALRAGTELVGQGLRTLELCVDNLTADYLDPIMAPVIDELMTALFDHLKPHPYSHFHAHTTLRILGKLGGRNRKFMTEALPVTFQQYVDDRASFDLRLIGSKRDRAFPAHLGIDLAIQKLTEIPKPVKGGVPQLSRQYDPYYKRQALNLIIAQTKLRVGFDSVPEDLPRLVRLQVEDLVKKNRDVDISLFEVSDKERSIAKKNEEQALLKRLLKALLYAESIPEFKQEVDALLVNLARHFTLIEIGRSVIDMKKAYTPFDTKSGEGPLFIDNRVLSEAILESLANENLEVREAAKRLIKEMHNAAVTVFGSPMHVPRMTFWSSLASTFCHGCYEEEWFTKQGGALGIQTLLTEIDLGDLWVAAKQIEFVRALMYVVKDMPQDLPEKTRRTAQVTLEQLLARITRNAKKQDCLPPPPPPAPPGSHPPQPPPRPPRLAQLVMMLNSELAHMNRHVRATARRSIEAIAAAAQAEVWELLEPHKKHILGPIYAKPLRALPFAIQIGYIDAVTYYMSLKRDFVPFDENLNRLLMESLALADASDESLAGKTLEFRTHDFIVNLRVSCIKILSRAMSFEEFGSGSNNPTRPKVVSVFFKCLYSDSQPTIDAANDALKAVLQHTTKLPKDLLQSGLRPVLASLQDAKRLTVHSLDNLGRLLRLLTTYFKVEIGTRLLEHVKQIADPNFLQQLSFTFFEQNNAMKVIAAVFNIFHLLPDAARQFKERVIDNVLDLEQKLRRTHHSPFRLPLYKYLNKYPSDIWAFTLQKLEDLRYGRFLAQVLRHPDSQVLRDYGAANVEFIIKTCNTVVVSGKETKFIAIINTINMLDALCQFPTANSQSWLDNKEHIEWLKTVGKELELQQKKNSLTPNLRLPAHQASEQLMNILTKALDRNPNDLDALFSLVEGITSDDFRETPALLSHIYNKIIRSDSIDFWRITILRCLDIYSGKTASQRMKWYLLHNIVNPIIAMDVMRTWDDPNKASRLLDRTVIDSINTKIWKVNLPDPQEDLLQPRVDHTRMEVLQLSAMLVKYRHALLQDARKDFIKFAWTYIRLDDVINKHAAYVVIGYFIAHYETPAKIVSQIYFSLLKTNQNEGRALVTQALELMAPVMPKRCPFPPGDRNPVWALAPRRILAEESQNVQQMTAIFHYLVRHPDLFYDTRDKFAMLIIQCLRKVASPPNPSNDNRKLALNMMWLIWQWEQRRVESKLSEPLRAPSESPNSNKRKLDEQQGLSPSATRQAEFQIPSVGRHKMIRYLVEFIAQLNERYPLPSARPSDPPTTTSFLLPSPSNELCKKATALLYNLLQPQYWGDLVEEMDLFPNVTDLVLAGEKSATLLSADPSDPEKCDDKLITSIINTLQVVRIVLHFKSDRWILDNMPQIQKILEKCLKSANPEIQDCLHMADRKYDGDRDVKPTIKRILDAVPEDIPMEDADGDIEPESQTSELIAWLSGIATESMAAGNYVSGINILWSLGHRKPSIIDQHIPAIMRSLQSKLARDHVSHYAALGHQASGLRPQADPNAPTEMKAYDLEIQTNLILKAIEVTAMRMEILGDNRRPFLSVLATIVEKSLHIPLCEKILEMVEGWVFRSEGTWPTLKEKTAVLHKMISFEHRTDPTMLHKFLNLVLRIYEDPKITRTELTVRMEHAFLIGTRAQDVEMRNKFMSIFDKCLSKTASARLAYVILGQNWDTLADSYWLAQASQLLLGAVDMNPTIQLHQDDFRTLPISQLVAPYAKDSREPSVMIDDKFEAFMANHRRFLAELGDVRARDVLEPLMQLQHIDANFAHELWVALFPMFWSAVPKEDRPDLERGLVTLLTKDYHSRQMDKRPNVVQSLMAGAVKTWPHCKIPPHVLKFEAKTYDAWYTALHQLENAAIKPEIDSAAVRESNLDALVDLYSTLGEDDLFYGTWRRRCQFVETNAGLSYEQHGMWEKAQRMYESAQIKARTGVIPFSEAEYMLWEDHWVLCAQKLQQWEILQDFAKHENFQDLLLECAWRNTEYWQNQENRDQLDTVIKGVMDAPTPRRYFFQAFMSLLKLHNKQETPQDFNRVVDEAIQLSIRKWHQLPKRLTAAHVPLLQNFQQLVELHDASVICQSLAQTNASNLDVKSGELKLLLGSWRDRLPNMWDDIVAWQDLVTWRQHVFGLINATYLQLIPQQAQNAGGASFAYRGYHETAWIINRFAHVARKHALPEVCISQLSRIYTLPNIEIQEAFLKLREQAKCHYQNPDELTSGLDVINNTNLNYFSAPQKAEFYTLKGMFLEKLGQKEEADTAFGTALYFDITAAKAWAEWGYFNDRKFKENPSDLPSAKQALTSYLQAASSYKNHKSRKLIARILWLLSLDDANGTIAAGFDDFKGEIYVWWWIIFIPQLLVGLGYKEAPRVQAILLKIAKTYPQALYFLLRTNREDMLTIKKNQEAKERARQRAAQAAIPNKPNGSPQLTKKDGAAGAADGRPPTANGETPKPPEIKIEGAAPNAPTAATPQAAANAPQVPGAAPAEQQTGGVQKKPPWELTEEIMSVLKTAFPLLALSMETMVDQIQKHFKCPPDEDAYRLIVALLNDGLSYVSRMPASYAKDVKLPAATENNITRFAETILPNHIRPTFEADFVKVKPTMYEYIHNLRKWRDKFEEKLDRRASPAPLESFAHYSPHLSEFRYQKFDDVEIPGQYLQHKDKNQDFIRIDRFLPNVDLVRTIGASHRRLRIRGHDGSVHAFAVQHPAARHCRREERVLQLFRQLNQTLANKKESRRRDLQFTLPLMVPLAPHIRIVQEDTSYITLQSVYEDHCRRHGMNKDEPILFTMEKLRGLMDAKALQKPEQAVTAKLEVYRAIQEKFVDHTIVLEYFQGAYPNFADFWLFRRRFSYQLAALTFMTYTMHIDKRYPHKMNIARGSGNIWGSEAVSYMAPSRPLFQNTEPVPFRLTPNLQTLMGPLATEGIFAASVMAIARCLTEPEQHLEHALTLFVRDEMMFWFTNSHRTMSLTENQLRETVQANCDMIVKKALALAQTPQGNLPAHQTVTDLIAKATNPMNLALCDALWMPYL

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8. Citations (1)

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Unit-cell length a length_a	1.000 Å
Unit-cell length b length_b	1.000 Å
Unit-cell length c length_c	1.000 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	90.00 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	—

Space group space_group	P 1
Space-group number int_tables_number	1
Crystal system crystal_system	triclinic

Resolution resolution	2.60 Å
Resolution测定方法 resolution_method	—
颗粒数 num_particles	1886619

fit	/app/data/saxs_computation/yo/9yol/9yol.fit
pddf	/app/data/pr_computation/yo/9yol/9yol.pr.out
profile	/app/data/saxs_computation/yo/9yol/9yol.dat

Tra1 module of ctSAGA

1. Protein Identity and Related Structures Protein Identity & Related Structures

SCA7 domain-containing protein

State in the Current Structure

Other States of the Same Protein in the Database

Spt20-like SEP domain-containing protein

State in the Current Structure

Other States of the Same Protein in the Database

Chains: C

State in the Current Structure

Other States of the Same Protein in the Database

Putative transcriptional coactivator HFI1 protein

State in the Current Structure

Other States of the Same Protein in the Database

Transcription initiation factor TFIID subunit 12

State in the Current Structure

Other States of the Same Protein in the Database

Non-specific serine/threonine protein kinase

State in the Current Structure

Other States of the Same Protein in the Database

SAXS scattering curve SAXS Profile

P(r) Distance Distribution P(r) Distribution

2. Structure Basics 2. Structure Basics

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

5. Crystallography and Experiment 5. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

6. Entities and Polymers Entities & Polymers (6)

Entity 1 Entity 1 polymer

Polymer Polymer

Entity 2 Entity 2 polymer

Polymer Polymer

Entity 3 Entity 3 polymer

Polymer Polymer

Entity 4 Entity 4 polymer

Polymer Polymer

Entity 5 Entity 5 polymer

Polymer Polymer

Entity 6 Entity 6 polymer

Polymer Polymer

8. Citations (1)

9. Files and Curves (10)

Files (7)

Curves (3)