Gated state sheep connexin-50 in DMPC nanodiscs at neutral pH

Method: ELECTRON MICROSCOPY D_max: 142.0 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9z9b
deposition_date	2025-11-18
title	Gated state sheep connexin-50 in DMPC nanodiscs at neutral pH
keywords	connexin, gap junction, cryo-EM, pH regulation, lipid gating, large-pore channel, MEMBRANE PROTEIN; MEMBRANE PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	45.79 Å
rg_electron	46.29 Å
i0	710577000.00
molecular_weight	277710.0 kDa
excluded_volume	370680 Å³
envelope_volume	484010 Å³
shell_volume	85553 Å³
envelope_diameter	151.1 Å
shell_rg	52.43 Å
envelope_rg	46.15 Å
shape_rg	46.31 Å
total_rg	46.46 Å
total_atoms	40392
n_residues	2208
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	142.0 Å
rg_real	46.11 Å
rg_real_error	1.13 Å
i0_real	7.1060e+08
i0_real_error	1.3060e+07
rg_reciprocal	45.79 Å
i0_reciprocal	710300000.0000
total_estimate	0.7992
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	45.9 Å
skewness	0.545
kurtosis	-0.335
angular_range	— – 0.1700 Å⁻¹
current_alpha	0.0000
highest_alpha	140400000.0000
n_real_points	35
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.796; Stabil: 0.998; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.005

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	2.700 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	2.70 Å
resolution_method	—
num_particles	15342

description	Gap junction alpha-8 protein
formula_weight	49216.8 kDa
src_method	nat
entity_count	12

Gated state sheep connexin-50 in DMPC nanodiscs at neutral pH

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Entity 2 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

type	polypeptide(L)
strand_id	A,B,C,D,E,F,G,H,I,J,K,L
atom_count	40392

description	1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE
formula_weight	677.9 kDa
src_method	syn
entity_count	192

fit	/app/data/saxs_computation/z9/9z9b/9z9b.fit
pddf	/app/data/pr_computation/z9/9z9b/9z9b.pr.out
profile	/app/data/saxs_computation/z9/9z9b/9z9b.dat