Current Protein Identity:P04591
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Difference tags compare only the current result set; every original PDB and assembly record remains separate.
Related-Structure Differences
Each row represents one biological assembly in one PDB entry; multiple monomers of the same protein are listed separately.
| PDB Entry | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Experimental Method | Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 1E6J Crystal structure of HIV-1 capsid protein (p24) in complex with Fab13B5 Deposited 2000-08-18 | Assembly 1 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain P
143–352(210 aa)
Fragment:GAG POLYPROTEIN RESIDUES 143-352
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;277 K;PROTEIN AT 7MG/ML IN 7% PEG8000, 0.1M TRIS-HCL PH=7.5, 5MM DTT, 0.5MM K2PTCL4 AT 4C USING THE HANGING DROP SYSTEM, pH 7.50
|
Resolution 3.00 Å R-free 0.284 |
| 1TSQ CRYSTAL STRUCTURE OF AP2V SUBSTRATE VARIANT OF NC-P1 DECAMER PEPTIDE IN COMPLEX WITH V82A/D25N HIV-1 PROTEASE MUTANT Deposited 2004-06-21 | Assembly 1 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain P
428–437(10 aa)
|
Mutation:AP2V | ACT ACETATE ION × 10 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.2;298 K;SODIUM PHOSPHATE, SODIUM CITRATE, AMMONIUM SULPHATE, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.00 Å R-free 0.231 |
| 1TSU CRYSTAL STRUCTURE OF DECAMER NCP1 SUBSTRATE PEPTIDE IN COMPLEX WITH WILD-TYPE D25N HIV-1 PROTEASE VARIANT Deposited 2004-06-21 | Assembly 1 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain P
428–434(7 aa)
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.2;298 K;SODIUM PHOSPHATE, SODIUM CITRATE, AMMONIUM SULPHATE, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.10 Å R-free 0.234 |
| 5I1R Quantitative characterization of configurational space sampled by HIV-1 nucleocapsid using solution NMR and X-ray scattering Deposited 2016-02-05 | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric(1) Consistent with protein count |
Chain A
378–432(55 aa)
|
Not recorded | ZN ZINC ION × 2 | Not declared |
NMR measurement conditions
pH 6.5;308 K;Ionic strength (raw mmCIF value) 50;Pressure 1
NMR sample composition
0.2 mM [U-13C; U-15N; U-2H] Nucleocapsid protein of human immunodeficiency virus 1 (HIV-1), 50 mM sodium chloride, 20 mM sodium phosphate, 1 mM Dithiothreitol, 0.1 mM zinc chloride, 93% H2O/7% D2O | 93% H2O/7% D2O
NMR sample composition
0.2 mM [U-13C; U-15N; U-2H] Nucleocapsid protein of human immunodeficiency virus 1 (HIV-1), 50 mM sodium chloride, 20 mM sodium phosphate, 1 mM Dithiothreitol, 0.1 mM zinc chloride, 5 % neutral bicelles, 93% H2O/7% D2O | 93% H2O/7% D2O
|
Resolution not provided |
| 6CPL Crystal structure of DR11 presenting the gag293 epitope Deposited 2018-03-13 | Assembly 1 Other combination Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain C
293–312(20 aa)
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 2 SO4 SULFATE ION × 5 NA SODIUM ION × 3 ACT ACETATE ION × 2 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;295 K;PEG 3350, Tris pH 8.5, Ethylene glycol
|
Resolution 2.45 Å R-free 0.253 |
| 6CPN Crystal structure of DR11 presenting the RQ13 peptide Deposited 2018-03-13 | Assembly 1 Other combination Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain C
299–311(13 aa)
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 2 SO4 SULFATE ION × 8 NA SODIUM ION × 3 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;295 K;ammonium sulfate, HEPES pH 7.5, PEG 4000
|
Resolution 2.00 Å R-free 0.236 |
| 6CPO Crystal structure of DR15 presenting the RQ13 peptide Deposited 2018-03-13 | Assembly 1 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain C
299–311(13 aa)
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 2 PGE TRIETHYLENE GLYCOL × 1 PO4 PHOSPHATE ION × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;295 K;PBS pH 7.5, Na acetate, PEG 4000
|
Resolution 2.40 Å R-free 0.246 |
| 6CPO Crystal structure of DR15 presenting the RQ13 peptide Deposited 2018-03-13 | Assembly 2 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain F
299–311(13 aa)
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 2 PO4 PHOSPHATE ION × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;295 K;PBS pH 7.5, Na acetate, PEG 4000
|
Resolution 2.40 Å R-free 0.246 |
| 6CQJ Crystal structure of DR1 presenting the RQ13 peptide Deposited 2018-03-15 | Assembly 1 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain C
299–311(13 aa)
|
Not recorded | PEG DI(HYDROXYETHYL)ETHER × 2 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;295 K;HEPES pH 7.5, Na acetate, PEG 4000
|
Resolution 2.75 Å R-free 0.249 |
| 6CQJ Crystal structure of DR1 presenting the RQ13 peptide Deposited 2018-03-15 | Assembly 2 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain F
299–311(13 aa)
|
Not recorded | PEG DI(HYDROXYETHYL)ETHER × 1 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 NA SODIUM ION × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;295 K;HEPES pH 7.5, Na acetate, PEG 4000
|
Resolution 2.75 Å R-free 0.249 |
| 6CQJ Crystal structure of DR1 presenting the RQ13 peptide Deposited 2018-03-15 | Assembly 3 Other combination Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain I
299–311(13 aa)
|
Not recorded | PEG DI(HYDROXYETHYL)ETHER × 1 NA SODIUM ION × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;295 K;HEPES pH 7.5, Na acetate, PEG 4000
|
Resolution 2.75 Å R-free 0.249 |
| 6CQL Crystal structure of F24 TCR -DR11-RQ13 peptide complex Deposited 2018-03-15 | Assembly 1 Protein heterocomplex Heteromer;Protein × 5 PDB declaration: pentameric(5) Consistent with protein count |
Chain C
299–311(13 aa)
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 2 MG MAGNESIUM ION × 3 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;295 K;Tris-HCl pH 8, NaCl, PEG 3350
|
Resolution 2.40 Å R-free 0.256 |
| 6CQN Crystal structure of F5 TCR -DR11-RQ13 peptide complex Deposited 2018-03-15 | Assembly 1 Protein heterocomplex Heteromer;Protein × 5 PDB declaration: pentameric(5) Consistent with protein count |
Chain C
299–311(13 aa)
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 2 SO4 SULFATE ION × 4 CL CHLORIDE ION × 2 MG MAGNESIUM ION × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;295 K;MgCl, Am SO4,PEG 3350
|
Resolution 2.50 Å R-free 0.251 |
| 6CQQ Crystal structure of F24 TCR -DR15-RQ13 peptide complex Deposited 2018-03-16 | Assembly 1 Protein heterocomplex Heteromer;Protein × 5 PDB declaration: pentameric(5) Consistent with protein count |
Chain C
299–311(13 aa)
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 MG MAGNESIUM ION × 2 SO4 SULFATE ION × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;295 K;PEG 4000, AmSO4, MgCl
|
Resolution 2.80 Å R-free 0.254 |
| 6CQQ Crystal structure of F24 TCR -DR15-RQ13 peptide complex Deposited 2018-03-16 | Assembly 2 Protein heterocomplex Heteromer;Protein × 5 PDB declaration: pentameric(5) Consistent with protein count |
Chain H
299–311(13 aa)
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 2 EDO 1,2-ETHANEDIOL × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;295 K;PEG 4000, AmSO4, MgCl
|
Resolution 2.80 Å R-free 0.254 |
| 6CQR Crystal structure of F24 TCR -DR1-RQ13 peptide complex Deposited 2018-03-16 | Assembly 1 Protein heterocomplex Heteromer;Protein × 5 PDB declaration: pentameric(5) Consistent with protein count |
Chain C
299–311(13 aa)
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;295 K;Tris-HCl pH 8, NaCl PEG 3350
|
Resolution 3.04 Å R-free 0.254 |
| 6CQR Crystal structure of F24 TCR -DR1-RQ13 peptide complex Deposited 2018-03-16 | Assembly 2 Protein heterocomplex Heteromer;Protein × 5 PDB declaration: pentameric(5) Consistent with protein count |
Chain H
299–311(13 aa)
|
Not recorded | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;295 K;Tris-HCl pH 8, NaCl PEG 3350
|
Resolution 3.04 Å R-free 0.254 |
| 6EC2 Structure of HIV-1 CA 1/3-hexamer Deposited 2018-08-07 | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric(2) Consistent with protein count |
Chain A
133–363(231 aa)
Chain G
133–363(231 aa)
|
Mutation:E45C, T54E, W184A, M185A Mutation:A14C, A42E, W184A, M185A | ACT ACETATE ION × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
MICROBATCH;pH 6;293 K;0.2M Calcium Acetate, 0.1 M MES:NaOH pH 6, 20% PEG 8000
|
Resolution 3.40 Å R-free 0.275 |
| 6EC2 Structure of HIV-1 CA 1/3-hexamer Deposited 2018-08-07 | Assembly 2 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric(2) Consistent with protein count |
Chain C
133–363(231 aa)
Chain F
133–363(231 aa)
|
Mutation:A14C, A42E, W184A, M185A Mutation:E45C, T54E, W184A, M185A | ACT ACETATE ION × 2 | X-RAY DIFFRACTION |
X-ray crystallization conditions
MICROBATCH;pH 6;293 K;0.2M Calcium Acetate, 0.1 M MES:NaOH pH 6, 20% PEG 8000
|
Resolution 3.40 Å R-free 0.275 |
| 6ECN HIV-1 CA 1/2-hexamer-EE Deposited 2018-08-08 | Assembly 1 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain A
133–363(231 aa)
Chain B
133–363(231 aa)
|
Mutation:E45C, T54C, W184A, M185A Mutation:A42C, T54E, W184A, M185A | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
MICROBATCH;293 K;0.1M Sodium Citrate pH 5, 8% PEG 8000
|
Resolution 3.40 Å R-free 0.275 |
| 6ECN HIV-1 CA 1/2-hexamer-EE Deposited 2018-08-08 | Assembly 2 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric(3) Consistent with protein count |
Chain D
133–363(231 aa)
Chain E
133–363(231 aa)
|
Mutation:E45C, T54C, W184A, M185A Mutation:A42C, T54E, W184A, M185A | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
MICROBATCH;293 K;0.1M Sodium Citrate pH 5, 8% PEG 8000
|
Resolution 3.40 Å R-free 0.275 |
| 6ECO Hexamer-2-Foldon HIV-1 capsid platform Deposited 2018-08-08 | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric(2) Consistent with protein count |
Chain A
133–358(226 aa)
Chain D
133–353(221 aa)
|
Mutation:E45C, T54E Mutation:A14C, A42E, A204D | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
MICROBATCH;pH 7.5;293 K;0.2M Sodium Chloride, 0.1M HEPES pH 7.5, 12% PEG 8000
|
Resolution 4.20 Å R-free 0.316 |
| 9CWV Gag CA-SP1 immature lattice from intact enveloped virus-like particles Deposited 2024-07-30 | Assembly 1 Protein homooligomer Homooligomer;Protein × 18 PDB declaration: octadecameric(18) Consistent with protein count |
Chain A
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 142-372)
Chain B
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 142-372)
Chain C
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 142-372)
Chain D
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 142-372)
Chain E
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 142-372)
Chain F
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 142-372)
Chain G
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 142-372)
Chain H
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 142-372)
Chain I
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 142-372)
Chain J
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 142-372)
Chain K
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 142-372)
Chain L
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 142-372)
Chain M
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 142-372)
Chain N
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 142-372)
Chain O
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 142-372)
Chain P
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 142-372)
Chain Q
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 142-372)
Chain R
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 142-372)
|
Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I | IHP INOSITOL HEXAKISPHOSPHATE × 7 | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.4;This is the final buffer in which the enveloped viral-like particle was resuspended. The Gag-CA-SP1 lattice is inside the viral-like particle and not directly in this buffer environment.
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.42 Å |
| 9D6C Gag CA-SP1 immature lattice bound with Lenacapavir and Bevirimat from enveloped virus like particles Deposited 2024-08-14 | Assembly 1 Protein homooligomer Homooligomer;Protein × 18 PDB declaration: 18-meric(18) Consistent with protein count |
Chain A
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain B
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain C
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain D
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain E
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain F
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain G
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain H
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain I
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain J
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain K
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain L
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain M
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain N
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain O
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain P
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain Q
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain R
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
|
Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I | QNG Lenacapavir × 18 2I4 3alpha-[(3-carboxy-3-methylbutanoyl)oxy]-8alpha,9beta,10alpha,13alpha,17alpha,19beta-lup-20(29)-en-28-oic acid × 7 IHP INOSITOL HEXAKISPHOSPHATE × 7 | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.4;This is the final buffer in which the enveloped viral like particle was resuspended. The Gag-CA-SP1 lattice is inside the viral like particle and thus not in the direct environment of this buffer.
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.10 Å |
| 9DWD Gag CA-SP1 immature lattice bound with Lenacapavir from enveloped virus like particles (T8I) Deposited 2024-10-09 | Assembly 1 Protein homooligomer Homooligomer;Protein × 18 PDB declaration: octadecameric(18) Consistent with protein count |
Chain A
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain B
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain C
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain D
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain E
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain F
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain G
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain H
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain I
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain J
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain K
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain L
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain M
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain N
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain O
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain P
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain Q
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
Chain R
141–372(232 aa)
Fragment:CA-SP1 domains (UNP residues 141-372)
|
Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I | QNG Lenacapavir × 18 IHP INOSITOL HEXAKISPHOSPHATE × 1 | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.4;This is the final buffer in which the enveloped viral-like particle was resuspended. The Gag-CA-SP1 lattice is inside the viral-like particle and thus not in the direct environment of this buffer.
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.13 Å |
| 9E39 Gag CA-SP1 (T8I) immature lattice bound with Bevirimat from enveloped virus like particles Deposited 2024-10-23 | Assembly 1 Protein homooligomer Homooligomer;Protein × 18 PDB declaration: octadecameric(18) Consistent with protein count |
Chain A
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 144-374)
Chain B
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 144-374)
Chain C
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 144-374)
Chain D
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 144-374)
Chain E
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 144-374)
Chain F
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 144-374)
Chain G
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 144-374)
Chain H
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 144-374)
Chain I
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 144-374)
Chain J
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 144-374)
Chain K
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 144-374)
Chain L
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 144-374)
Chain M
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 144-374)
Chain N
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 144-374)
Chain O
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 144-374)
Chain P
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 144-374)
Chain Q
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 144-374)
Chain R
144–374(231 aa)
Fragment:CA-SP1 domains (UNP residues 144-374)
|
Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I Mutation:T239I | 2I4 3alpha-[(3-carboxy-3-methylbutanoyl)oxy]-8alpha,9beta,10alpha,13alpha,17alpha,19beta-lup-20(29)-en-28-oic acid × 1 IHP INOSITOL HEXAKISPHOSPHATE × 1 | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.4;This is the final buffer in which the enveloped viral like particle was resuspended. The Gag-CA-SP1 lattice is inside the viral like particle and thus not in the direct environment of this buffer.
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.71 Å |