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Protein Structures and Oligomeric States

Enter a protein name, UniProt accession or PDB ID. Name searches ask you to confirm the protein identity before related structures are queried.

Current Protein Identity：P62983 New Search
11PDB entries
14Biological assembly
21chain/assembly records
Main Difference Dimensions in This Set
Different construct Different mutation/modification Different assembly state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics

Difference tags compare only the current result set; every original PDB and assembly record remains separate.

Related-Structure Differences

Each row represents one biological assembly in one PDB entry; multiple monomers of the same protein are listed separately.

PDB Entry Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Experimental Method Experimental Conditions Structure Quality
3VHT Crystal structure of GFP-Wrnip1 UBZ domain fusion protein in complex with ubiquitin Deposited 2011-09-06 Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric（3） Consistent with protein count
Chain C 1–76（76 aa）
Not recorded ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, SITTING DROP；pH 7；293 K；0.2M DL-Malic acid, 20% PEG 3350, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K
Resolution 2.40 Å R-free 0.238
5GVI Zebrafish USP30 in complex with Lys6-linked diubiquitin Deposited 2016-09-05 Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric（3） Consistent with protein count
Chain B 1–76（76 aa）
Chain C 1–72（72 aa）
Mutation：K6R ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, SITTING DROP；pH 9；293 K；90 mM Tris-HCl, 180 mM ammonium acetate, 23% PEG3350, 10 mM TCEP
Resolution 1.87 Å R-free 0.206
5XIS Crystal structure of RNF168 UDM1 in complex with Lys63-linked diubiquitin, form I Deposited 2017-04-27 Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric（3） Consistent with protein count
Chain B 1–76（76 aa）
Chain C 1–76（76 aa）
Mutation：K63R XYZ beta-D-xylofuranose × 1 MG MAGNESIUM ION × 2 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, SITTING DROP；pH 8.5；293 K；15% PEG3350, 0.1 M Tris-HCl (pH 8.5), 100 mM MgCl2
Resolution 1.78 Å R-free 0.245
5XIS Crystal structure of RNF168 UDM1 in complex with Lys63-linked diubiquitin, form I Deposited 2017-04-27 Assembly 2 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric（3） Consistent with protein count
Chain E 1–76（76 aa）
Chain F 1–76（76 aa）
Mutation：K63R XYZ beta-D-xylofuranose × 1 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, SITTING DROP；pH 8.5；293 K；15% PEG3350, 0.1 M Tris-HCl (pH 8.5), 100 mM MgCl2
Resolution 1.78 Å R-free 0.245
5XIT Crystal structure of RNF168 UDM1 in complex with Lys63-linked diubiquitin, form II Deposited 2017-04-27 Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric（3） Consistent with protein count
Chain B 1–76（76 aa）
Chain D 1–76（76 aa）
Mutation：K63R GOL GLYCEROL × 4 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 6.5；293 K；23% PEG MME 2000, 0.1 M Bis-Tris (pH 6.5), 10 mM Pr acetate
Resolution 2.25 Å R-free 0.239
5XIT Crystal structure of RNF168 UDM1 in complex with Lys63-linked diubiquitin, form II Deposited 2017-04-27 Assembly 2 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric（3） Consistent with protein count
Chain F 1–76（76 aa）
Chain H 1–76（76 aa）
Mutation：K63R GOL GLYCEROL × 1 PR PRASEODYMIUM ION × 3 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 6.5；293 K；23% PEG MME 2000, 0.1 M Bis-Tris (pH 6.5), 10 mM Pr acetate
Resolution 2.25 Å R-free 0.239
5XIU Crystal structure of RNF168 UDM2 in complex with Lys63-linked diubiquitin Deposited 2017-04-27 Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric（2） Consistent with protein count
Chain B 1–76（76 aa）
Not recorded EDO 1,2-ETHANEDIOL × 5 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, SITTING DROP；pH 8.5；293 K；25% PEG3350, 0.1 M Tris-HCl (pH8.5), 0.2 M Ammonium Acetate
Resolution 1.80 Å R-free 0.207
7E62 Mouse TAB2 NZF in complex with Lys6-linked diubiquitin Deposited 2021-02-21 Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric（3） Consistent with protein count
Chain A 1–76（76 aa）
Chain B 1–77（77 aa）
Mutation：K6R Mutation：A77D EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, SITTING DROP；pH 7.5；293 K；100 mM HEPES-NaOH (pH 7.5), 1.44 M sodium citrate
Resolution 1.99 Å R-free 0.264
7E62 Mouse TAB2 NZF in complex with Lys6-linked diubiquitin Deposited 2021-02-21 Assembly 2 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric（3） Consistent with protein count
Chain H 1–76（76 aa）
Chain I 1–77（77 aa）
Mutation：K6R Mutation：A77D ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, SITTING DROP；pH 7.5；293 K；100 mM HEPES-NaOH (pH 7.5), 1.44 M sodium citrate
Resolution 1.99 Å R-free 0.264
7LS1 80S ribosome from mouse bound to eEF2 (Class II) Deposited 2021-02-17 Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric（85） Consistent with all polymers
Chain U3 1–156（156 aa）
Not recorded ZN ZINC ION × 7 MG MAGNESIUM ION × 1 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；3 second blotting, force 3
Resolution 3.30 Å
7LS2 80S ribosome from mouse bound to eEF2 (Class I) Deposited 2021-02-17 Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 85-meric（85） Consistent with all polymers
Chain U3 1–156（156 aa）
Not recorded ZN ZINC ION × 7 MG MAGNESIUM ION × 1 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE；3 second blotting, force 3
Resolution 3.10 Å
9QOH Mouse Ribosome POST translocation state Deposited 2025-03-26 Assembly 1 Protein–RNA Heteromer；Protein × 77 PDB declaration: 83-meric（83） Review required
Chain U3 1–156（156 aa）
Not recorded MG MAGNESIUM ION × 122 ZN ZINC ION × 6 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM Hepes pH 7.5, 150 mM NaCl, 10 mM MgCl2, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.78 Å
9QQL Mouse RPS15 P131 Mutant Ribosome POST translocation state Deposited 2025-04-01 Assembly 1 Protein–RNA Heteromer；Protein × 76 PDB declaration: 83-meric（83） Consistent with all polymers
Chain U3 1–156（156 aa）
Not recorded MG MAGNESIUM ION × 122 UNK UNKNOWN × 22 ZN ZINC ION × 6 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM Hepes pH 7.5, 150 mM NaCl, 10 mM MgCl2, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.09 Å
9QZP Mouse Ribosome Classical Pre translocation state Deposited 2025-04-23 Assembly 1 Protein–RNA Heteromer；Protein × 77 PDB declaration: 85-meric（85） Consistent with all polymers
Chain U3 1–156（156 aa）
Not recorded MG MAGNESIUM ION × 118 ZN ZINC ION × 6 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5；20 mM Hepes pH 7.5, 150 mM NaCl, 10 mM MgCl2, 1 mM DTT
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.43 Å

This page presents structural evidence recorded in PDB/mmCIF.“No recorded non-water small molecule” does not prove that the experimental sample was ligand-free; experimental conditions belong to the PDB experiment, while ligands and copy counts are shown for each biological assembly.