Current Protein Identity：Q7VTN4
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Difference tags compare only the current result set; every original PDB and assembly record remains separate.
Related-Structure Differences
Each row represents one biological assembly in one PDB entry; multiple monomers of the same protein are listed separately.
| PDB Entry | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Experimental Method | Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 9YL5 Crystal Structure of 6,7-dimethyl-8-ribityllumazine synthase from Bordetella pertussis in complex with 5-amino-6-(D-ribitylamino)uracil Deposited 2025-10-08 | Assembly 1 Protein homooligomer Homooligomer；Protein × 10 PDB declaration: decameric（10） Consistent with protein count |
Chain A
1–155（155 aa）
Chain B
1–155（155 aa）
Chain C
1–155（155 aa）
Chain D
1–155（155 aa）
Chain E
1–155（155 aa）
|
Not recorded | CL CHLORIDE ION × 36 LMZ 5-NITROSO-6-RIBITYL-AMINO-2,4(1H,3H)-PYRIMIDINEDIONE × 10 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；291 K；Morpheus B9: 20%(v/v) PEG 500 MME, 10%(w/v) PEG 20000, 100 mM Tris/BICINE, pH 8.5, 30 mM NaF, 30 mM NaBr and 30 mM NaI. BopeA.00730.a.B2.PW39381 at 13.8 mg/mL. 2mM ligand added to protein prior to crystallization. plate 19802 B9 drop 1, Puck: PSL-2810, Cryo: direct
|
Resolution 2.56 Å R-free 0.248 |
| 9ZNH Crystal Structure of 6,7-dimethyl-8-ribityllumazine synthase from Bordetella pertussis Deposited 2025-12-12 | Assembly 1 Protein homooligomer Homooligomer；Protein × 5 PDB declaration: pentameric（5） Consistent with protein count |
Chain A
1–155（155 aa）
Fragment：residues 1-155
Chain B
1–155（155 aa）
Fragment：residues 1-155
Chain C
1–155（155 aa）
Fragment：residues 1-155
Chain D
1–155（155 aa）
Fragment：residues 1-155
Chain E
1–155（155 aa）
Fragment：residues 1-155
|
Not recorded | CL CHLORIDE ION × 6 PG4 TETRAETHYLENE GLYCOL × 4 BCN BICINE × 2 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；291 K；Morpheus E12: 12.5%(v/v) MPD, 12.5%(v/v) PEG 1000, 12.5%(w/v) PEG 3350, 100 mM Tris/BICINE, pH 8.5, 30 mM Diethylene glycol, 30 mM Triethyleneglycol, 30 mM Tetraethylene glycol and 30 mM Pentaethylene glycol. BopeA.00730.a.B2.PW39381 at 13.8 mg/mL. The diffraction data where highly ansiotropic resulting in high B-factors. Therefore the anisotropically truncated data (staraniso) were used for refinement and both data sets were deposited. plate 19802 E12 drop 1, Puck: PSL-1009, Cryo: direct
|
Resolution 2.34 Å R-free 0.259 |
| 9ZNJ Crystal Structure of 6,7-dimethyl-8-ribityllumazine synthase from Bordetella pertussis in complex with 6,7-dimethyl-8-(1'-D-ribityl) lumazine Deposited 2025-12-12 | Assembly 1 Protein homooligomer Homooligomer；Protein × 10 PDB declaration: decameric（10） Consistent with protein count |
Chain A
1–155（155 aa）
Fragment：residues 1-155
Chain B
1–155（155 aa）
Fragment：residues 1-155
Chain C
1–155（155 aa）
Fragment：residues 1-155
Chain D
1–155（155 aa）
Fragment：residues 1-155
Chain E
1–155（155 aa）
Fragment：residues 1-155
|
Not recorded | PO4 PHOSPHATE ION × 12 CL CHLORIDE ION × 32 DLZ 1-deoxy-1-(6,7-dimethyl-2,4-dioxo-3,4-dihydropteridin-8(2H)-yl)-D-ribitol × 10 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 8.5；291 K；Morpheus B12: 12.5%(v/v) MPD, 12.5%(v/v) PEG 1000, 12.5%(w/v) PEG 3350, 100 mM Tris/BICINE, pH 8.5, 30 mM NaF, 30 mM NaBr and 30 mM NaI. BopeA.00730.a.B2.PW39381 at 13.8 mg/mL. 24 hour soak with 2 mM 6,7-dimethyl-8-(1'-D-ribityl) lumazine. plate 19802 B12, Puck: PSL-0104, Cryo: direct
|
Resolution 2.15 Å R-free 0.261 |