Current Protein Identity:Q96RN5 New Search
Main Difference Dimensions in This Set
Different construct Different mutation/modification Different assembly state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics

Difference tags compare only the current result set; every original PDB and assembly record remains separate.

Related-Structure Differences

Each row represents one biological assembly in one PDB entry; multiple monomers of the same protein are listed separately.

PDB Entry Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Experimental Method Experimental Conditions Structure Quality
2GUT Solution structure of the trans-activation domain of the human co-activator ARC105 Deposited 2006-05-01 Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric(1) Consistent with protein count
Chain A 5–78(74 aa) Fragment:ARC/MEDIATOR KIX domain, residues 5-78
Not recorded No recorded non-water small molecule SOLUTION NMR
NMR measurement conditions pH 6.8;298 K;Ionic strength (raw mmCIF value) 30 mM NaCl;Pressure ambient
NMR sample composition 1mM arc105 U-15N, 13C, 30mM NaCl, 10mM phosphate buffer, 90% H2O, 10% D2O | 90% H2O/10% D2O
Resolution not provided
7EMF Human Mediator (deletion of MED1-IDR) in a Tail-extended conformation Deposited 2021-04-13 Assembly 1 Protein heterocomplex Heteromer;Protein × 27 PDB declaration: 27-meric(27) Consistent with protein count
Chain O 1–788(788 aa)
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 8
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.50 Å
7ENA TFIID-based PIC-Mediator holo-complex in pre-assembled state (pre-hPIC-MED) Deposited 2021-04-16 Assembly 1 Protein–DNA Heteromer;Protein × 74 PDB declaration: 76-meric(76) Consistent with all polymers
Chain o 1–788(788 aa)
Not recorded ZN ZINC ION × 16 MG MAGNESIUM ION × 1 SF4 IRON/SULFUR CLUSTER × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.9
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 4.07 Å
7ENC TFIID-based PIC-Mediator holo-complex in fully-assembled state (hPIC-MED) Deposited 2021-04-16 Assembly 1 Protein–DNA Heteromer;Protein × 74 PDB declaration: 76-meric(76) Consistent with all polymers
Chain o 1–788(788 aa)
Not recorded ZN ZINC ION × 16 SF4 IRON/SULFUR CLUSTER × 1 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.9
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 4.13 Å
7ENJ Human Mediator (deletion of MED1-IDR) in a Tail-bent conformation (MED-B) Deposited 2021-04-17 Assembly 1 Protein heterocomplex Heteromer;Protein × 26 PDB declaration: 26-meric(26) Consistent with protein count
Chain O 1–788(788 aa)
Not recorded ZN ZINC ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 8
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 4.40 Å
7LBM Structure of the human Mediator-bound transcription pre-initiation complex Deposited 2021-01-08 Assembly 1 Protein–DNA Heteromer;Protein × 54 PDB declaration: 56-meric(56) Consistent with all polymers
Chain z 1–788(788 aa)
Not recorded MG MAGNESIUM ION × 2 ZN ZINC ION × 16 SF4 IRON/SULFUR CLUSTER × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.9
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 4.80 Å
8GXQ PIC-Mediator in complex with +1 nucleosome (T40N) in MH-binding state Deposited 2022-09-21 Assembly 1 Protein–DNA Heteromer;Protein × 83 PDB declaration: 87-meric(87) Consistent with all polymers
Chain o 1–788(788 aa)
Not recorded ZN ZINC ION × 19 SF4 IRON/SULFUR CLUSTER × 1 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.9
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 5.04 Å
8GXS PIC-Mediator in complex with +1 nucleosome (T40N) in H-binding state Deposited 2022-09-21 Assembly 1 Protein–DNA Heteromer;Protein × 83 PDB declaration: 87-meric(87) Consistent with all polymers
Chain o 1–788(788 aa)
Not recorded ZN ZINC ION × 19 SF4 IRON/SULFUR CLUSTER × 1 MG MAGNESIUM ION × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.9
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 4.16 Å
8J9A Solution structure of ABD3 (residues 453-561) of human MED15 isoform 2 Deposited 2023-05-03 Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric(1) Consistent with protein count
Chain A 453–561(109 aa) Fragment:activator-binding domain 3
Not recorded No recorded non-water small molecule SOLUTION NMR
NMR measurement conditions pH 7.5;298 K;Ionic strength (raw mmCIF value) 200;Pressure 1
NMR sample composition 1 mM [U-99% 13C; U-99% 15N] MED15_ABD3, 20 mM HEPES, 200 mM sodium chloride, 1 mM TCEP, 6 % v/v D2O, 94% H2O/6% D2O | 94% H2O/6% D2O
Resolution not provided
8T9D CryoEM structure of TR-TRAP Deposited 2023-06-23 Assembly 1 Protein heterocomplex Heteromer;Protein × 26 PDB declaration: 26-meric(26) Consistent with protein count
Chain J 1–788(788 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.9
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 4.66 Å
8TQW Structure of human transcriptional Mediator complex Deposited 2023-08-08 Assembly 1 Protein heterocomplex Heteromer;Protein × 29 PDB declaration: 29-meric(29) Consistent with protein count
Chain O 1–788(788 aa)
Not recorded ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.9
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 8.20 Å
8TRH The IDRc bound human core Mediator complex Deposited 2023-08-09 Assembly 1 Protein heterocomplex Heteromer;Protein × 26 PDB declaration: 26-meric(26) Consistent with protein count
Chain O 1–788(788 aa)
Not recorded ZN ZINC ION × 2 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.9
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.70 Å