Current Protein Identity:Q9WX76 New Search
Main Difference Dimensions in This Set
Different assembly state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics

Difference tags compare only the current result set; every original PDB and assembly record remains separate.

Related-Structure Differences

Each row represents one biological assembly in one PDB entry; multiple monomers of the same protein are listed separately.

PDB Entry Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Experimental Method Experimental Conditions Structure Quality
1EH1 RIBOSOME RECYCLING FACTOR FROM THERMUS THERMOPHILUS Deposited 2000-02-18 Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric(1) Consistent with protein count
Chain A 1–185(185 aa)
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP;pH 4.9;293 K;ammonium sulphate, sodium acetate, MES, pH 4.9, VAPOR DIFFUSION, HANGING DROP, temperature 20K
Resolution 2.60 Å R-free 0.307
3J0D Models for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complex Deposited 2011-06-29 Assembly 1 Protein–RNA Heteromer;Protein × 3 PDB declaration: undecameric(11) Consistent with all polymers
Chain J 1–185(185 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer BUFFER R;pH 7.5;BUFFER R
cryo-EM vitrification conditions Cryogen ETHANE;VITROBOT
Resolution 11.10 Å
3J0E Models for the T. thermophilus ribosome recycling factor and the E. coli elongation factor G bound to the E. coli post-termination complex Deposited 2011-06-29 Assembly 1 Protein–RNA Heteromer;Protein × 3 PDB declaration: nonameric(9) Consistent with all polymers
Chain G 1–185(185 aa)
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer BUFFER R;pH 7.5;BUFFER R
cryo-EM vitrification conditions Cryogen ETHANE;VITROBOT
Resolution 9.90 Å
4V54 Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). Deposited 2007-06-16 Assembly 1 Protein–RNA Heteromer;Protein × 50 PDB declaration: 53-meric(53) Consistent with all polymers
Chain B6 1–185(185 aa)
Not recorded MG MAGNESIUM ION × 170 ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray crystallization conditions batch;pH 7.5;277 K;MPD, PEG 8000, MgCl2, NH4Cl, spermine, spermidine, TRIS, EDTA, pH 7.5, batch, temperature 277K
Resolution 3.30 Å R-free 0.304
4V54 Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). Deposited 2007-06-16 Assembly 2 Protein–RNA Heteromer;Protein × 50 PDB declaration: 53-meric(53) Consistent with all polymers
Chain D6 1–185(185 aa)
Not recorded MG MAGNESIUM ION × 173 ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray crystallization conditions batch;pH 7.5;277 K;MPD, PEG 8000, MgCl2, NH4Cl, spermine, spermidine, TRIS, EDTA, pH 7.5, batch, temperature 277K
Resolution 3.30 Å R-free 0.304
4V55 Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF). Deposited 2007-06-17 Assembly 1 Protein–RNA Heteromer;Protein × 50 PDB declaration: 53-meric(53) Consistent with all polymers
Chain B6 1–185(185 aa)
Not recorded MG MAGNESIUM ION × 170 LLL (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDR OXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL × 2 ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray crystallization conditions batch;pH 7.5;277 K;MPD, PEG 8000, MgCl2, NH4Cl, spermine, spermidine, TRIS, EDTA, pH 7.5, batch, temperature 277K
Resolution 4.00 Å R-free 0.305
4V55 Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF). Deposited 2007-06-17 Assembly 2 Protein–RNA Heteromer;Protein × 50 PDB declaration: 53-meric(53) Consistent with all polymers
Chain D6 1–185(185 aa)
Not recorded MG MAGNESIUM ION × 173 LLL (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDR OXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL × 2 ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray crystallization conditions batch;pH 7.5;277 K;MPD, PEG 8000, MgCl2, NH4Cl, spermine, spermidine, TRIS, EDTA, pH 7.5, batch, temperature 277K
Resolution 4.00 Å R-free 0.305
4V5A Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet Deposited 2007-06-28 Assembly 1 Protein–RNA Heteromer;Protein × 50 PDB declaration: 56-meric(56) Consistent with all polymers
Chain AY 1–185(185 aa)
Not recorded MG MAGNESIUM ION × 741 ZN ZINC ION × 2 X-RAY DIFFRACTION
X-ray crystallization conditions pH 7;COMPARE SELMER ET AL SCIENCE 2006, pH 7.0
Resolution 3.50 Å R-free 0.326
4V5A Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet Deposited 2007-06-28 Assembly 2 Protein–RNA Heteromer;Protein × 50 PDB declaration: 56-meric(56) Consistent with all polymers
Chain CY 1–185(185 aa)
Not recorded MG MAGNESIUM ION × 741 ZN ZINC ION × 2 X-RAY DIFFRACTION
X-ray crystallization conditions pH 7;COMPARE SELMER ET AL SCIENCE 2006, pH 7.0
Resolution 3.50 Å R-free 0.326
4V5Y Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF). Deposited 2007-06-19 Assembly 1 Protein–RNA Heteromer;Protein × 50 PDB declaration: 53-meric(53) Consistent with all polymers
Chain B6 1–185(185 aa)
Not recorded MG MAGNESIUM ION × 170 PAR PAROMOMYCIN × 2 ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray crystallization conditions batch;pH 7.5;277 K;MPD, PEG 8000, MgCl2, NH4Cl, spermine, spermidine, TRIS, EDTA, pH 7.5, batch, temperature 277K
Resolution 4.45 Å R-free 0.309
4V5Y Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF). Deposited 2007-06-19 Assembly 2 Protein–RNA Heteromer;Protein × 50 PDB declaration: 53-meric(53) Consistent with all polymers
Chain D6 1–185(185 aa)
Not recorded MG MAGNESIUM ION × 173 PAR PAROMOMYCIN × 2 ZN ZINC ION × 1 X-RAY DIFFRACTION
X-ray crystallization conditions batch;pH 7.5;277 K;MPD, PEG 8000, MgCl2, NH4Cl, spermine, spermidine, TRIS, EDTA, pH 7.5, batch, temperature 277K
Resolution 4.45 Å R-free 0.309
6UCQ Crystal structure of the Thermus thermophilus 70S ribosome recycling complex Deposited 2019-09-17 Assembly 1 Insufficient information Heteromer;Protein × 50 PDB declaration: 56-meric(56) Consistent with all polymers
Chain 1w 1–185(185 aa)
Not recorded MG MAGNESIUM ION × 1523 ZN ZINC ION × 6 SF4 IRON/SULFUR CLUSTER × 1 GDP GUANOSINE-5'-DIPHOSPHATE × 1 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION;pH 7.3;292 K;0.15 M L-arginine-HCl, 0.1M Tris-HCl pH 7.3, 2.4-2.7% PEG-20K, 7-9% MPD, 0.5 mM BME
Resolution 3.50 Å R-free 0.294
6UCQ Crystal structure of the Thermus thermophilus 70S ribosome recycling complex Deposited 2019-09-17 Assembly 2 Insufficient information Heteromer;Protein × 50 PDB declaration: 56-meric(56) Consistent with all polymers
Chain 2w 1–185(185 aa)
Not recorded MG MAGNESIUM ION × 1350 ZN ZINC ION × 6 SF4 IRON/SULFUR CLUSTER × 1 GDP GUANOSINE-5'-DIPHOSPHATE × 1 K POTASSIUM ION × 1 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION;pH 7.3;292 K;0.15 M L-arginine-HCl, 0.1M Tris-HCl pH 7.3, 2.4-2.7% PEG-20K, 7-9% MPD, 0.5 mM BME
Resolution 3.50 Å R-free 0.294