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12oy

Single particle cryo-EM structure of human MTCH2

Method: ELECTRON MICROSCOPY D_max: 97.3 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	12oy
deposition_date	2026-04-14
title	Single particle cryo-EM structure of human MTCH2
keywords	mitochondrial outer membrane insertase, SLC25 carrier fold, hydrophilic groove, membrane protein biogenesis, MEMBRANE PROTEIN; MEMBRANE PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	29.73 Å
rg_electron	29.23 Å
i0	32648100.00
molecular_weight	45155.0 kDa
excluded_volume	56928 Å³
envelope_volume	78078 Å³
shell_volume	24130 Å³
envelope_diameter	99.4 Å
shell_rg	34.08 Å
envelope_rg	28.39 Å
shape_rg	29.21 Å
total_rg	29.83 Å
total_atoms	3174
n_residues	410
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	97.3 Å
rg_real	29.95 Å
rg_real_error	0.87 Å
i0_real	3.2650e+07
i0_real_error	4.9470e+05
rg_reciprocal	29.86 Å
i0_reciprocal	32650000.0000
total_estimate	0.8502
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	25.7 Å
skewness	0.402
kurtosis	-0.680
angular_range	— – 0.2650 Å⁻¹
current_alpha	0.0000
highest_alpha	3002000.0000
n_real_points	54
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.826; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.728; Smooth: 0.842

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

Entity 1 polymer

description	Mitochondrial carrier homolog 2,Mitochondrial brown fat uncoupling protein 1
formula_weight	33557.2 kDa
mutation	L199V, A200Y, T226A
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	3186

MADAASQVLLGSGLTILSQPLMYVKVLIQVGYEPLPPTIGRNIFGRQVCQLPGLFSYAQHIASIDGRRGLFTGLTPRLCSGVLGTVVHGKVLQHYQESDKGEELGPGNVQKEVSSSFDHVIKETTREMIARSAATLITHPFHVITLRSMVQFIGRESKYCGLCDSIITIYREEGILGFFAGLVPRLLGDILSLWLCNSVYYLMKEAFVKNNILADDVPCHLVSQAVAGFFASMLTYPFVLVSNLMAVNNCGLAGGCPPYSPIYTSWIDCWCMLQKEGNMSRGNSLFFRKVPFGKTYCCDLKMLI

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Spodoptera frugiperda

Entity 2 polymer

description	UCP1 Nanobody
formula_weight	13913.5 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	B

GQRQLVESGGGLVQPGGSLRLSCAASGRTSSTYTMGWFRQAPGKEREFVAAISWTGTPYYADSVKGRFTISRDNAKNTVYLQMNSLEPEDTAVYYCAAARPGLFIFVSDYARTAKYDYWGKGTPVTV

Source

organism	synthetic construct
ncbi_taxonomy_id	32630
host_organism	Escherichia coli BL21(DE3)

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.600 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	3.60 Å
resolution_method	—
num_particles	485622

fit	/app/data/saxs_computation/2o/12oy/12oy.fit
pddf	/app/data/pr_computation/2o/12oy/12oy.pr.out
profile	/app/data/saxs_computation/2o/12oy/12oy.dat

Single particle cryo-EM structure of human MTCH2

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)