SAXSdb — 1a6d

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1. Structure Basics

entry_id	1a6d
deposition_date	1998-02-24
title	THERMOSOME FROM T. ACIDOPHILUM
keywords	THERMOPLASMA ACIDOPHILUM, GROUP II CHAPERONIN, CCT, TRIC, PROTEIN FOLDING, ATPASE, CHAPERONIN; CHAPERONIN
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	35.21 Å
rg_electron	34.72 Å
i0	183166000.00
molecular_weight	108270.0 kDa
excluded_volume	135830 Å³
envelope_volume	180140 Å³
shell_volume	43762 Å³
envelope_diameter	115.6 Å
shell_rg	40.87 Å
envelope_rg	34.09 Å
shape_rg	34.74 Å
total_rg	35.14 Å
total_atoms	9324
n_residues	1005
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	115.3 Å
rg_real	35.18 Å
rg_real_error	0.83 Å
i0_real	1.8320e+08
i0_real_error	2.9030e+06
rg_reciprocal	35.20 Å
i0_reciprocal	183200000.0000
total_estimate	0.8998
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	43.5 Å
skewness	0.251
kurtosis	-0.539
angular_range	— – 0.2250 Å⁻¹
current_alpha	0.0000
highest_alpha	33250000.0000
n_real_points	46
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.926; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.991; Smooth: 0.923

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

Entity 1 polymer

description	THERMOSOME (ALPHA SUBUNIT)
formula_weight	58323.8 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	9324

MMTGQVPILVLKEGTQREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSTDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIASKKSTPPSGQGGQGQGMPGGGMPEY

Entity 2 polymer

description	THERMOSOME (BETA SUBUNIT)
formula_weight	58552.6 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	B

MIAGQPIFILKEGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADEKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIATKSSSSSSNPPKSGSSSESSED

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6. Citations (1)

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length_a	168.300 Å
length_b	168.300 Å
length_c	203.400 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	16

space_group	I 4 2 2
int_tables_number	97
crystal_system	—

resolution	2.600 Å
resolution_low	8.000 Å
r_factor	0.2150
r_work	0.2150
r_free	0.2980

fit	/app/data/saxs_computation/a6/1a6d/1a6d.fit
pddf	/app/data/pr_computation/a6/1a6d/1a6d.pr.out
profile	/app/data/saxs_computation/a6/1a6d/1a6d.dat

THERMOSOME FROM T. ACIDOPHILUM

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)