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1bgg

GLUCOSIDASE A FROM BACILLUS POLYMYXA COMPLEXED WITH GLUCONATE

Method: X-RAY DIFFRACTION D_max: 135.3 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1bgg
deposition_date	1997-05-12
title	GLUCOSIDASE A FROM BACILLUS POLYMYXA COMPLEXED WITH GLUCONATE
keywords	FAMILY 1 BETA-GLUCOSIDASE COMPLEX, GLYCOSYL-HYDROLASE COMPLEX; FAMILY 1 BETA-GLUCOSIDASE COMPLEX
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	42.98 Å
rg_electron	42.64 Å
i0	639230000.00
molecular_weight	206570.0 kDa
excluded_volume	256580 Å³
envelope_volume	319000 Å³
shell_volume	60369 Å³
envelope_diameter	140.6 Å
shell_rg	49.53 Å
envelope_rg	41.87 Å
shape_rg	42.65 Å
total_rg	42.91 Å
total_atoms	14615
n_residues	1788
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	135.3 Å
rg_real	42.84 Å
rg_real_error	1.17 Å
i0_real	6.3920e+08
i0_real_error	1.1840e+07
rg_reciprocal	42.98 Å
i0_reciprocal	639300000.0000
total_estimate	0.8843
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	65.8 Å
skewness	0.108
kurtosis	-0.655
angular_range	— – 0.1850 Å⁻¹
current_alpha	0.0000
highest_alpha	240400000.0000
n_real_points	38
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.912; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.757

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	BETA-GLUCOSIDASE A
formula_weight	51698.7 kDa
ec_number	3.2.1.21
src_method	man
entity_count	4

Polymer

type	polypeptide(L)
strand_id	A,B,C,D
atom_count	16109

MTIFQFPQDFMWGTATAAYQIEGAYQEDGRGLSIWDTFAHTPGKVFNGDNGNVACDSYHRYEEDIRLMKELGIRTYRFSVSWPRIFPNGDGEVNQEGLDYYHRVVDLLNDNGIEPFCTLYHWDLPQALQDAGGWGNRRTIQAFVQFAETMFREFHGKIQHWLTFNEPWCIAFLSNMLGVHAPGLTNLQTAIDVGHHLLVAHGLSVRRFRELGTSGQIGIAPNVSWAVPYSTSEEDKAACARTISLHSDWFLQPIYQGSYPQFLVDWFAEQGATVPIQDGDMDIIGEPIDMIGINYYSMSVNRFNPEAGFLQSEEINMGLPVTDIGWPVESRGLYEVLHYLQKYGNIDIYITENGACINDEVVNGKVQDDRRISYMQQHLVQVHRTIHDGLHVKGYMAWSLLDNFEWAEGYNMRFGMIHVDFRTQVRTPKESYYWYRNVVSNNWLETRR

Source

organism	Paenibacillus polymyxa
ncbi_taxonomy_id	1406
host_organism	Escherichia coli

Entity 2 non-polymer

description	D-gluconic acid
formula_weight	196.2 kDa
src_method	man
entity_count	3

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	1494

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6. Citations (3)

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length_a	205.850 Å
length_b	205.850 Å
length_c	155.500 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	32

space_group	P 42 21 2
int_tables_number	94
crystal_system	—

resolution	2.300 Å
resolution_low	8.000 Å
r_factor	0.2000
r_work	0.2000
r_free	0.2500

fit	/app/data/saxs_computation/bg/1bgg/1bgg.fit
pddf	/app/data/pr_computation/bg/1bgg/1bgg.pr.out
profile	/app/data/saxs_computation/bg/1bgg/1bgg.dat

GLUCOSIDASE A FROM BACILLUS POLYMYXA COMPLEXED WITH GLUCONATE

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction