SAXSdb — 1bmf

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1. Structure Basics

entry_id	1bmf
deposition_date	1996-03-13
title	BOVINE MITOCHONDRIAL F1-ATPASE
keywords	ATP PHOSPHORYLASE (H+ TRANSPORTING), ATP SYNTHASE, F1FO ATP SYNTHASE, F1-ATPASE, ATP PHOSPHORYLASE; ATP PHOSPHORYLASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	41.77 Å
rg_electron	40.94 Å
i0	1526840000.00
molecular_weight	325690.0 kDa
excluded_volume	409210 Å³
envelope_volume	518840 Å³
shell_volume	97163 Å³
envelope_diameter	133.6 Å
shell_rg	52.03 Å
envelope_rg	40.57 Å
shape_rg	40.96 Å
total_rg	41.37 Å
total_atoms	22878
n_residues	2987
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	124.3 Å
rg_real	41.47 Å
rg_real_error	0.58 Å
i0_real	1.5270e+09
i0_real_error	2.1840e+07
rg_reciprocal	41.77 Å
i0_reciprocal	1527000000.0000
total_estimate	0.8956
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	55.6 Å
skewness	0.019
kurtosis	-0.560
angular_range	— – 0.1900 Å⁻¹
current_alpha	0.0000
highest_alpha	374900000.0000
n_real_points	39
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.928; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.954; Smooth: 0.901

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4. Crystallography & Experiment

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5. Entities & Polymer Info (7)

Entity 1 polymer

description	BOVINE MITOCHONDRIAL F1-ATPASE
formula_weight	55301.2 kDa
ec_number	3.6.1.34
src_method	nat
entity_count	3

Polymer

type	polypeptide(L)
strand_id	A,B,C
atom_count	23481

QKTGTAEVSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGFEA

Entity 2 polymer

description	BOVINE MITOCHONDRIAL F1-ATPASE
formula_weight	51757.8 kDa
ec_number	3.6.1.34
src_method	nat
entity_count	3

Polymer

type	polypeptide(L)
strand_id	D,E,F

AAQASPSPKAGATTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAEEHS

Entity 3 polymer

description	BOVINE MITOCHONDRIAL F1-ATPASE
formula_weight	30185.7 kDa
ec_number	3.6.1.34
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	G

ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL

Entity 4 non-polymer

description	MAGNESIUM ION
formula_weight	24.3 kDa
src_method	syn
entity_count	5

Entity 5 non-polymer

description	PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
formula_weight	506.2 kDa
src_method	syn
entity_count	4

Entity 6 non-polymer

description	ADENOSINE-5'-DIPHOSPHATE
formula_weight	427.2 kDa
src_method	syn
entity_count	1

Entity 7 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	603

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6. Citations (3)

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length_a	284.220 Å
length_b	107.760 Å
length_c	139.680 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	12

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

resolution	2.850 Å
resolution_low	6.000 Å
r_factor	—
r_work	—
r_free	—

fit	/app/data/saxs_computation/bm/1bmf/1bmf.fit
pddf	/app/data/pr_computation/bm/1bmf/1bmf.pr.out
profile	/app/data/saxs_computation/bm/1bmf/1bmf.dat

BOVINE MITOCHONDRIAL F1-ATPASE

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (7)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

Entity 4 non-polymer

Entity 5 non-polymer

Entity 6 non-polymer

Entity 7 water

6. Citations (3)

7. Files & Curves (10)

Files (7)

Curves (3)