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1bn5

HUMAN METHIONINE AMINOPEPTIDASE 2

Method: X-RAY DIFFRACTION D_max: 69.2 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1bn5
deposition_date	1998-07-31
title	HUMAN METHIONINE AMINOPEPTIDASE 2
keywords	METHIONINE AMINOPEPTIDASE, HYDROLASE, AMINOPEPTIDASE; AMINOPEPTIDASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	21.09 Å
rg_electron	20.14 Å
i0	27953900.00
molecular_weight	39854.0 kDa
excluded_volume	49595 Å³
envelope_volume	57585 Å³
shell_volume	23298 Å³
envelope_diameter	69.9 Å
shell_rg	27.43 Å
envelope_rg	20.70 Å
shape_rg	20.14 Å
total_rg	21.08 Å
total_atoms	2786
n_residues	355
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	69.2 Å
rg_real	20.97 Å
rg_real_error	0.44 Å
i0_real	2.7950e+07
i0_real_error	3.7780e+05
rg_reciprocal	20.99 Å
i0_reciprocal	27950000.0000
total_estimate	0.6640
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	26.4 Å
skewness	0.174
kurtosis	-0.444
angular_range	— – 0.3750 Å⁻¹
current_alpha	0.0000
highest_alpha	10420000.0000
n_real_points	69
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.841; Stabil: 1.000; Sysdev: 0.368; Positv: 1.000; Valcen: 1.000; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	METHIONINE AMINOPEPTIDASE
formula_weight	52985.6 kDa
ec_number	3.4.11.18
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	3031

MAGVEEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTDPPSVPICDLYPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTVPIIKGGEATRMEEGEVYAIETFGSTGKGVVHDDMECSHYMKNFDVGHVPIRLPRTKHLLNVINENFGTLAFCRRWLDRLGESKYLMALKNLCDLGIVDPYPPLCDIKGSYTAQFEHTILLRPTCKEVVSRGDDY

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Spodoptera frugiperda

Entity 2 non-polymer

description	COBALT (II) ION
formula_weight	58.9 kDa
src_method	syn
entity_count	2

Entity 3 non-polymer

description	TERTIARY-BUTYL ALCOHOL
formula_weight	74.1 kDa
src_method	syn
entity_count	2

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	239

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6. Citations (1)

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length_a	90.490 Å
length_b	99.380 Å
length_c	101.590 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	C 2 2 21
int_tables_number	20
crystal_system	—

resolution	1.800 Å
resolution_low	25.000 Å
r_factor	—
r_work	0.1830
r_free	0.2280

fit	/app/data/saxs_computation/bn/1bn5/1bn5.fit
pddf	/app/data/pr_computation/bn/1bn5/1bn5.pr.out
profile	/app/data/saxs_computation/bn/1bn5/1bn5.dat

HUMAN METHIONINE AMINOPEPTIDASE 2

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction