1bzd
TERTIARY STRUCTURES OF THREE AMYLOIDOGENIC TRANSTHYRETIN VARIANTS AND IMPLICATIONS FOR AMYLOID FIBRIL FORMATION
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 1bzd |
| deposition_date | 1998-10-28 |
| title | TERTIARY STRUCTURES OF THREE AMYLOIDOGENIC TRANSTHYRETIN VARIANTS AND IMPLICATIONS FOR AMYLOID FIBRIL FORMATION |
| keywords | THYROID HORMONE, LIVER, PLASMA, CEREBROSPINAL FLUID, POLYNEUROPATHY, DISEASE MUTATION, TRANSPORT, THYROXINE, BINDING PROTEIN; BINDING PROTEIN |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 19.86 Å |
| rg_electron | 18.58 Å |
| i0 | 13480000.00 |
| molecular_weight | 27573.0 kDa |
| excluded_volume | 34521 ų |
| envelope_volume | 39782 ų |
| shell_volume | 18191 ų |
| envelope_diameter | 67.4 Å |
| shell_rg | 24.42 Å |
| envelope_rg | 18.80 Å |
| shape_rg | 18.53 Å |
| total_rg | 19.60 Å |
| total_atoms | 1948 |
| n_residues | 254 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 67.5 Å |
| rg_real | 19.79 Å |
| rg_real_error | 0.48 Å |
| i0_real | 1.3480e+07 |
| i0_real_error | 1.6310e+05 |
| rg_reciprocal | 19.80 Å |
| i0_reciprocal | 13480000.0000 |
| total_estimate | 0.8692 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 22.8 Å |
| skewness | 0.266 |
| kurtosis | -0.267 |
| angular_range | — – 0.4000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 2582000.0000 |
| n_real_points | 72 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.784; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.985; Smooth: 0.958 |