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1c9p

COMPLEX OF BDELLASTASIN WITH PORCINE TRYPSIN

Method: X-RAY DIFFRACTION D_max: 64.7 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1c9p
deposition_date	1999-08-03
title	COMPLEX OF BDELLASTASIN WITH PORCINE TRYPSIN
keywords	COMPLEX (HYDROLASE-INHIBITOR), HYDROLASE, INHIBITOR, ANTISTASIN, PLASMIN, ISOASPARTATE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX; HYDROLASE/HYDROLASE INHIBITOR
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	19.03 Å
rg_electron	17.97 Å
i0	16412300.00
molecular_weight	28845.0 kDa
excluded_volume	35393 Å³
envelope_volume	40577 Å³
shell_volume	18856 Å³
envelope_diameter	66.5 Å
shell_rg	24.38 Å
envelope_rg	18.35 Å
shape_rg	17.94 Å
total_rg	18.96 Å
total_atoms	2005
n_residues	272
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	64.7 Å
rg_real	18.96 Å
rg_real_error	0.41 Å
i0_real	1.6410e+07
i0_real_error	1.7970e+05
rg_reciprocal	18.97 Å
i0_reciprocal	16410000.0000
total_estimate	0.7858
solution_quality	GOOD a GOOD solution
n_peaks	3
r_peak_primary	24.3 Å
skewness	0.295
kurtosis	-0.130
angular_range	— – 0.4200 Å⁻¹
current_alpha	0.0000
highest_alpha	3629000.0000
n_real_points	73
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.739; Stabil: 0.998; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	TRYPSIN
formula_weight	23494.5 kDa
ec_number	3.4.21.4
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	2140

IVGGYTCAANSIPYQVSLNSGSHFCGGSLINSQWVVSAAHCYKSRIQVRLGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLDSRVATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGPVVCNGQLQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIAAN

Entity 2 polymer

description	BDELLASTASIN
formula_weight	6351.2 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	B

FDVNSHTTPCGPVTCSGAQMCEVDKCVCSDLHCKVKCEHGFKKDDNGCEYACICADAPQ

Source

organism	Hirudo medicinalis
common_name	medicinal leech
ncbi_taxonomy_id	6421
host_organism	Saccharomyces cerevisiae

Entity 3 non-polymer

description	CALCIUM ION
formula_weight	40.1 kDa
src_method	syn
entity_count	1

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	135

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6. Citations (3)

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length_a	63.330 Å
length_b	63.330 Å
length_c	130.610 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 43 21 2
int_tables_number	96
crystal_system	—

resolution	2.800 Å
resolution_low	8.000 Å
r_factor	0.1900
r_work	0.1850
r_free	0.2270

fit	/app/data/saxs_computation/c9/1c9p/1c9p.fit
pddf	/app/data/pr_computation/c9/1c9p/1c9p.pr.out
profile	/app/data/saxs_computation/c9/1c9p/1c9p.dat

COMPLEX OF BDELLASTASIN WITH PORCINE TRYPSIN

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Source

Entity 3 non-polymer

Entity 4 water

6. Citations (3)

7. Files & Curves (10)

Files (7)

Curves (3)