1cff

NMR SOLUTION STRUCTURE OF A COMPLEX OF CALMODULIN WITH A BINDING PEPTIDE OF THE CA2+-PUMP

Method: SOLUTION NMR Dmax: 86.4 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

CALMODULIN

Xenopus laevis

UniProt P62155

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 2–149 Not recorded CALCIUM PUMP × 1 (P23634) CA CALCIUM ION × 4 SOLUTION NMR NMR measurement conditions:pH 6.5;303 K;Ionic strength (raw mmCIF value) 0.115;Pressure 1 NMR sample composition:90% H2O/10% D2O, 100% D2O Resolution not provided

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

22 other PDB entries and 27 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name CALM_XENLA
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–148; UniProt 2–149

CALCIUM PUMP

OrganismNot specified

UniProt P23634

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain B; UniProt 1100–1119 Fragment:CAM-BINDING DOMAIN Mutation:C20W CALMODULIN × 1 (P62155) CA CALCIUM ION × 4 SOLUTION NMR NMR measurement conditions:pH 6.5;303 K;Ionic strength (raw mmCIF value) 0.115;Pressure 1 NMR sample composition:90% H2O/10% D2O, 100% D2O Resolution not provided

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name AT2B4_HUMAN
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–20; UniProt 1100–1119

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1cff

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1cff
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1cff
Deposition date deposition_date1999-03-18
Structure title titleNMR SOLUTION STRUCTURE OF A COMPLEX OF CALMODULIN WITH A BINDING PEPTIDE OF THE CA2+-PUMP
Keywords keywordsCALMODULIN, C20W, PLASMA MEMBRANE CALCIUM PUMP; CALMODULIN
Experimental Method methodSOLUTION NMR

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier25.55
Radius of gyration Rg (electron density) rg_electron25.09
Forward intensity I(0) i03922940000.00
Molecular weight molecular_weight502960.0 kDa
Excluded volume excluded_volume618150 ų
Envelope volume envelope_volume223030 ų
Hydration-shell volume shell_volume54756 ų
Envelope diameter envelope_diameter100.1
Shell Rg shell_rg41.56
Envelope Rg envelope_rg32.24
Shape Rg shape_rg25.06
Total Rg total_rg25.58
Total atoms total_atoms68588
Residues n_residues4368
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax86.4
Rg (real space) rg_real25.60
Rg uncertainty (real space) rg_real_error0.80
I(0) (real space) i0_real3.9230e+09
I(0) uncertainty (real space) i0_real_error5.9110e+07
Rg (reciprocal space) rg_reciprocal25.59
I(0) (reciprocal space) i0_reciprocal3923000000.0000
Solution quality estimate total_estimate0.7517
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks4
Primary peak position r_peak_primary19.5
Skewness Skewness skewness0.246
Kurtosis Kurtosis kurtosis-0.638
Angular range angular_range— – 0.3100 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha7129000.0000
Real-space data points n_real_points63
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.658; Stabil: 0.998; Sysdev: 1.000; Positv: 1.000; Valcen: 0.800; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 3 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd1cffa_
Class classa — All alpha proteins
Fold Fold folda.39 — EF Hand-like
Superfamily Superfamily superfamilya.39.1 — EF-hand
Family Family familya.39.1.5 — Calmodulin-like

CATH v4.4 (2 domains)

Domain ID domain_id1cffA01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology238 — Recoverin; domain 1
Homologous superfamily homologous superfamily10 — EF-hand
Domain ID domain_id1cffA02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology238 — Recoverin; domain 1
Homologous superfamily homologous superfamily10 — EF-hand

8. Citations (1)

9. Files and Curves (10)