1cow

BOVINE MITOCHONDRIAL F1-ATPASE COMPLEXED WITH AUROVERTIN B

Method: X-RAY DIFFRACTION Dmax: 125.6 Å Quality: GOOD

1. 蛋白身份与相关结构 Protein Identity & Related Structures

BOVINE MITOCHONDRIAL F1-ATPASE

物种未注明

UniProt P19483

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 7 PDB 声明:heptameric(7) 与蛋白拷贝数一致 链 A; UniProt 45–553 链 B; UniProt 45–553 链 C; UniProt 45–553 未记录 BOVINE MITOCHONDRIAL F1-ATPASE × 3 (P00829) BOVINE MITOCHONDRIAL F1-ATPASE × 1 (P05631) MG MAGNESIUM ION × 5 ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 4 ADP ADENOSINE-5'-DIPHOSPHATE × 1 AUR AUROVERTIN B × 2 X-RAY DIFFRACTION mmCIF 未提供已读取环境条件 分辨率 3.10 Å R-free 0.280

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 58 个其他 PDB 条目、62 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 ATPA1_BOVIN
Isoform
PDB实体 1
链与序列区间 作者链 A; PDB构建体 2–510; UniProt 45–553 作者链 B; PDB构建体 2–510; UniProt 45–553 作者链 C; PDB构建体 2–510; UniProt 45–553

BOVINE MITOCHONDRIAL F1-ATPASE

物种未注明

UniProt P00829

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 7 PDB 声明:heptameric(7) 与蛋白拷贝数一致 链 D; UniProt 47–528 链 E; UniProt 47–528 链 F; UniProt 47–528 未记录 BOVINE MITOCHONDRIAL F1-ATPASE × 3 (P19483) BOVINE MITOCHONDRIAL F1-ATPASE × 1 (P05631) MG MAGNESIUM ION × 5 ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 4 ADP ADENOSINE-5'-DIPHOSPHATE × 1 AUR AUROVERTIN B × 2 X-RAY DIFFRACTION mmCIF 未提供已读取环境条件 分辨率 3.10 Å R-free 0.280

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 55 个其他 PDB 条目、59 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 ATPB_BOVIN
Isoform
PDB实体 2
链与序列区间 作者链 D; PDB构建体 1–482; UniProt 47–528 作者链 E; PDB构建体 1–482; UniProt 47–528 作者链 F; PDB构建体 1–482; UniProt 47–528

BOVINE MITOCHONDRIAL F1-ATPASE

物种未注明

UniProt P05631

当前结构中的状态

Assembly 聚集状态 构建体 突变与修饰 配体、离子与共同组分 实验方法与环境 结构质量
1 蛋白异源复合物 异源复合物 蛋白 × 7 PDB 声明:heptameric(7) 与蛋白拷贝数一致 链 G; UniProt 26–297 未记录 BOVINE MITOCHONDRIAL F1-ATPASE × 3 (P19483) BOVINE MITOCHONDRIAL F1-ATPASE × 3 (P00829) MG MAGNESIUM ION × 5 ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 4 ADP ADENOSINE-5'-DIPHOSPHATE × 1 AUR AUROVERTIN B × 2 X-RAY DIFFRACTION mmCIF 未提供已读取环境条件 分辨率 3.10 Å R-free 0.280

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。

共 58 个其他 PDB 条目、62 个 assembly。 打开独立比较页并筛选聚集状态

查看构建体与数据证据
UniProt名称 ATPG_BOVIN
Isoform
PDB实体 3
链与序列区间 作者链 G; PDB构建体 1–272; UniProt 26–297

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

SAXS 散射曲线 SAXS Profile

SAXS profile for 1cow

P(r) 距离分布 P(r) Distribution

P(r) distribution for 1cow
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2. 结构基本信息 2. Structure Basics

条目编号 entry_id1cow
沉积日期 deposition_date1996-05-08
结构标题 titleBOVINE MITOCHONDRIAL F1-ATPASE COMPLEXED WITH AUROVERTIN B
关键词 keywordsATP PHOSPHORYLASE, HYDROGEN ION TRANSPORT, ATP SYNTHASE, F1F ATP SYNTHASE, F1-ATPASE; HYDROGEN ION TRANSPORT
实验方法 methodX-RAY DIFFRACTION

3. SAXS 参数 (CRYSOL 理论计算) 3. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier41.88
回转半径 Rg (电子) rg_electron41.05
零角强度 I(0) i01531280000.00
分子量 molecular_weight326610.0 kDa
排除体积 excluded_volume410510 ų
包络体积 envelope_volume519760 ų
水化壳体积 shell_volume97280 ų
包络直径 envelope_diameter133.6
壳层 Rg shell_rg52.07
包络 Rg envelope_rg40.58
形状 Rg shape_rg41.06
总 Rg total_rg41.47
总原子数 total_atoms22944
残基数 n_residues2987
球谐函数阶数 n_harmonics20
q 范围 q_range— – 0.5000 −1
数据点数 n_points101
壳层类型 shell_typedirectional
溶剂电子密度 solvent_density0.3340 e/ų
壳层衬度 contrast_shell0.0300 e/ų
CRYSOL 版本 crysol_version4.1.3

4. P(r) 距离分布 (GNOM 反演) 4. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax125.6
Rg (实空间) rg_real41.57
Rg 误差 (实空间) rg_real_error0.53
I(0) (实空间) i0_real1.5310e+09
I(0) 误差 (实空间) i0_real_error2.6790e+07
Rg (倒空间) rg_reciprocal41.88
I(0) (倒空间) i0_reciprocal1532000000.0000
解质量估计 total_estimate0.8950
解质量评级 solution_quality GOOD a GOOD solution
P(r) 峰数 n_peaks1
主峰位置 r_peak_primary56.2
偏度 Skewness skewness0.017
峰度 Kurtosis kurtosis-0.563
角度范围 angular_range— – 0.1900 −1
当前正则化参数 α current_alpha0.0000
最高正则化参数 α highest_alpha373100000.0000
实空间数据点数 n_real_points39
GNOM 版本 gnom_version4.1.3
质量判据 quality_criteria AN1: 0.000; Oscil: 0.919; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.952; Smooth: 0.922

5. 晶体学与实验 5. Crystallography & Experiment

6. 实体与聚合物信息 Entities & Polymers (8)

7. 折叠分类 (SCOP + CATH) 38 domains

SCOP 2.08 (19 domains)

结构域编号 domain_idd1cowa1
类 Class classa — All alpha proteins
折叠类型 Fold folda.69 — Left-handed superhelix
超家族 Superfamily superfamilya.69.1 — C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family familya.69.1.1 — C-terminal domain of alpha and beta subunits of F1 ATP synthase
结构域编号 domain_idd1cowa2
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.1 — N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family familyb.49.1.1 — N-terminal domain of alpha and beta subunits of F1 ATP synthase
结构域编号 domain_idd1cowa3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family familyc.37.1.11 — RecA protein-like (ATPase-domain)
结构域编号 domain_idd1cowb1
类 Class classa — All alpha proteins
折叠类型 Fold folda.69 — Left-handed superhelix
超家族 Superfamily superfamilya.69.1 — C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family familya.69.1.1 — C-terminal domain of alpha and beta subunits of F1 ATP synthase
结构域编号 domain_idd1cowb2
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.1 — N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family familyb.49.1.1 — N-terminal domain of alpha and beta subunits of F1 ATP synthase
结构域编号 domain_idd1cowb3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family familyc.37.1.11 — RecA protein-like (ATPase-domain)
结构域编号 domain_idd1cowc1
类 Class classa — All alpha proteins
折叠类型 Fold folda.69 — Left-handed superhelix
超家族 Superfamily superfamilya.69.1 — C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family familya.69.1.1 — C-terminal domain of alpha and beta subunits of F1 ATP synthase
结构域编号 domain_idd1cowc2
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.1 — N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family familyb.49.1.1 — N-terminal domain of alpha and beta subunits of F1 ATP synthase
结构域编号 domain_idd1cowc3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family familyc.37.1.11 — RecA protein-like (ATPase-domain)
结构域编号 domain_idd1cowd1
类 Class classa — All alpha proteins
折叠类型 Fold folda.69 — Left-handed superhelix
超家族 Superfamily superfamilya.69.1 — C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family familya.69.1.1 — C-terminal domain of alpha and beta subunits of F1 ATP synthase
结构域编号 domain_idd1cowd2
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.1 — N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family familyb.49.1.1 — N-terminal domain of alpha and beta subunits of F1 ATP synthase
结构域编号 domain_idd1cowd3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family familyc.37.1.11 — RecA protein-like (ATPase-domain)
结构域编号 domain_idd1cowe1
类 Class classa — All alpha proteins
折叠类型 Fold folda.69 — Left-handed superhelix
超家族 Superfamily superfamilya.69.1 — C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family familya.69.1.1 — C-terminal domain of alpha and beta subunits of F1 ATP synthase
结构域编号 domain_idd1cowe2
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.1 — N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family familyb.49.1.1 — N-terminal domain of alpha and beta subunits of F1 ATP synthase
结构域编号 domain_idd1cowe3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family familyc.37.1.11 — RecA protein-like (ATPase-domain)
结构域编号 domain_idd1cowf1
类 Class classa — All alpha proteins
折叠类型 Fold folda.69 — Left-handed superhelix
超家族 Superfamily superfamilya.69.1 — C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family familya.69.1.1 — C-terminal domain of alpha and beta subunits of F1 ATP synthase
结构域编号 domain_idd1cowf2
类 Class classb — All beta proteins
折叠类型 Fold foldb.49 — Domain of alpha and beta subunits of F1 ATP synthase-like
超家族 Superfamily superfamilyb.49.1 — N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases
家族 Family familyb.49.1.1 — N-terminal domain of alpha and beta subunits of F1 ATP synthase
结构域编号 domain_idd1cowf3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family familyc.37.1.11 — RecA protein-like (ATPase-domain)
结构域编号 domain_idd1cowg_
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.49 — Pyruvate kinase C-terminal domain-like
超家族 Superfamily superfamilyc.49.2 — ATP synthase (F1-ATPase), gamma subunit
家族 Family familyc.49.2.1 — ATP synthase (F1-ATPase), gamma subunit

CATH v4.4 (19 domains)

结构域编号 domain_id1cowA01
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily20
结构域编号 domain_id1cowA02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
结构域编号 domain_id1cowA03
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology150 — Lysin
同源超家族 H-superfamily homologous superfamily20 — ATP synthase alpha/beta chain, C-terminal domain
结构域编号 domain_id1cowB01
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily20
结构域编号 domain_id1cowB02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
结构域编号 domain_id1cowB03
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology150 — Lysin
同源超家族 H-superfamily homologous superfamily20 — ATP synthase alpha/beta chain, C-terminal domain
结构域编号 domain_id1cowC01
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
同源超家族 H-superfamily homologous superfamily20
结构域编号 domain_id1cowC02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
结构域编号 domain_id1cowC03
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology150 — Lysin
同源超家族 H-superfamily homologous superfamily20 — ATP synthase alpha/beta chain, C-terminal domain
结构域编号 domain_id1cowD01
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology10 — Thrombin, subunit H
同源超家族 H-superfamily homologous superfamily170
结构域编号 domain_id1cowD02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
结构域编号 domain_id1cowD03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology1140 — Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3
同源超家族 H-superfamily homologous superfamily10 — Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3
结构域编号 domain_id1cowE01
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology10 — Thrombin, subunit H
同源超家族 H-superfamily homologous superfamily170
结构域编号 domain_id1cowE02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
结构域编号 domain_id1cowE03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology1140 — Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3
同源超家族 H-superfamily homologous superfamily10 — Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3
结构域编号 domain_id1cowF01
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology10 — Thrombin, subunit H
同源超家族 H-superfamily homologous superfamily170
结构域编号 domain_id1cowF02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
结构域编号 domain_id1cowF03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology1140 — Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3
同源超家族 H-superfamily homologous superfamily10 — Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3
结构域编号 domain_id1cowG00
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily80 — ATP synthase, gamma subunit, helix hairpin domain

8. 引用文献 (4)

9. 文件与曲线 (10)