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1d3g

HUMAN DIHYDROOROTATE DEHYDROGENASE COMPLEXED WITH BREQUINAR ANALOG

Method: X-RAY DIFFRACTION D_max: 60.7 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1d3g
deposition_date	1999-09-29
title	HUMAN DIHYDROOROTATE DEHYDROGENASE COMPLEXED WITH BREQUINAR ANALOG
keywords	PROTEIN-ANTIPROLIFERATIVE AGENT COMPLEX, OXIDOREDUCTASE; OXIDOREDUCTASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	20.41 Å
rg_electron	19.11 Å
i0	27776000.00
molecular_weight	40262.0 kDa
excluded_volume	50437 Å³
envelope_volume	56312 Å³
shell_volume	23548 Å³
envelope_diameter	61.6 Å
shell_rg	26.53 Å
envelope_rg	19.44 Å
shape_rg	19.08 Å
total_rg	20.14 Å
total_atoms	2836
n_residues	360
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	60.7 Å
rg_real	20.25 Å
rg_real_error	0.23 Å
i0_real	2.7780e+07
i0_real_error	3.3520e+05
rg_reciprocal	20.28 Å
i0_reciprocal	27780000.0000
total_estimate	0.9026
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	26.0 Å
skewness	0.060
kurtosis	-0.492
angular_range	— – 0.3900 Å⁻¹
current_alpha	0.0000
highest_alpha	7304000.0000
n_real_points	71
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.931; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.969; Smooth: 0.968

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4. Crystallography & Experiment

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5. Entities & Polymer Info (8)

Entity 1 polymer

description	DIHYDROOROTATE DEHYDROGENASE
formula_weight	39856.5 kDa
ec_number	1.3.3.1
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	3144

MATGDERFYAEHLMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGHKFRNPVGIAAGFDKHGEAVDGLYKMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGADHRR

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Escherichia coli

Entity 2 non-polymer

description	SULFATE ION
formula_weight	96.1 kDa
src_method	syn
entity_count	1

Entity 3 non-polymer

description	ACETATE ION
formula_weight	59.0 kDa
src_method	syn
entity_count	1

Entity 4 non-polymer

description	2-BIPHENYL-4-YL-6-FLUORO-3-METHYL-QUINOLINE-4-CARBOXYLIC ACID
formula_weight	357.4 kDa
src_method	syn
entity_count	1

Entity 5 non-polymer

description	FLAVIN MONONUCLEOTIDE
formula_weight	456.3 kDa
src_method	syn
entity_count	1

Entity 6 non-polymer

description	OROTIC ACID
formula_weight	156.1 kDa
src_method	syn
entity_count	1

Entity 7 non-polymer

description	DECYLAMINE-N,N-DIMETHYL-N-OXIDE
formula_weight	201.3 kDa
src_method	syn
entity_count	1

Entity 8 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	274

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6. Citations (1)

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length_a	90.610 Å
length_b	90.610 Å
length_c	122.410 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	6

space_group	P 32 2 1
int_tables_number	154
crystal_system	—

resolution	1.600 Å
resolution_low	30.000 Å
r_factor	—
r_work	0.1680
r_free	0.1880

fit	/app/data/saxs_computation/d3/1d3g/1d3g.fit
pddf	/app/data/pr_computation/d3/1d3g/1d3g.pr.out
profile	/app/data/saxs_computation/d3/1d3g/1d3g.dat