STRUCTURE OF HUMAN GUANYLATE BINDING PROTEIN-1 IN NUCLEOTIDE FREE FORM

Method: X-RAY DIFFRACTION D_max: 129.8 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1dg3
deposition_date	1999-11-23
title	STRUCTURE OF HUMAN GUANYLATE BINDING PROTEIN-1 IN NUCLEOTIDE FREE FORM
keywords	GBP, GTP HYDROLYSIS, GDP, GMP, INTERFERON INDUCED, DYNAMIN RELATED, LARGE GTPASE FAMILY, SIGNALING PROTEIN; SIGNALING PROTEIN
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	37.77 Å
rg_electron	38.95 Å
i0	59591400.00
molecular_weight	62069.0 kDa
excluded_volume	77957 Å³
envelope_volume	104860 Å³
shell_volume	26165 Å³
envelope_diameter	137.5 Å
shell_rg	37.54 Å
envelope_rg	39.80 Å
shape_rg	38.96 Å
total_rg	38.79 Å
total_atoms	4357
n_residues	540
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	129.8 Å
rg_real	38.81 Å
rg_real_error	1.67 Å
i0_real	5.9590e+07
i0_real_error	1.0280e+06
rg_reciprocal	38.17 Å
i0_reciprocal	59550000.0000
total_estimate	0.6494
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	27.8 Å
skewness	0.722
kurtosis	-0.339
angular_range	— – 0.2100 Å⁻¹
current_alpha	0.0000
highest_alpha	5441000.0000
n_real_points	43
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.360; Stabil: 0.998; Sysdev: 1.000; Positv: 1.000; Valcen: 0.270; Smooth: 0.093

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (2)

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length_a	155.470 Å
length_b	41.030 Å
length_c	121.000 Å
angle_alpha	90.00 °
angle_beta	109.42 °
angle_gamma	90.00 °
z_pdb	4

space_group	C 1 2 1
int_tables_number	5
crystal_system	—

resolution	1.800 Å
resolution_low	29.940 Å
r_factor	0.2420
r_work	0.2420
r_free	0.2760

description	PROTEIN (INTERFERON-INDUCED GUANYLATE-BINDING PROTEIN 1)
formula_weight	68003.6 kDa
src_method	man
entity_count	1

type	polypeptide(L)
strand_id	A
atom_count	4698

STRUCTURE OF HUMAN GUANYLATE BINDING PROTEIN-1 IN NUCLEOTIDE FREE FORM

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (2)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Escherichia coli BL21

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	341

fit	/app/data/saxs_computation/dg/1dg3/1dg3.fit
pddf	/app/data/pr_computation/dg/1dg3/1dg3.pr.out
profile	/app/data/saxs_computation/dg/1dg3/1dg3.dat