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1dv1

STRUCTURE OF BIOTIN CARBOXYLASE (APO)

Method: X-RAY DIFFRACTION D_max: 117.7 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1dv1
deposition_date	2000-01-19
title	STRUCTURE OF BIOTIN CARBOXYLASE (APO)
keywords	ATP-grasp, carboxylase, biotin-dependent, LIGASE; LIGASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	31.27 Å
rg_electron	30.86 Å
i0	142758000.00
molecular_weight	94479.0 kDa
excluded_volume	118220 Å³
envelope_volume	145210 Å³
shell_volume	39908 Å³
envelope_diameter	123.7 Å
shell_rg	36.94 Å
envelope_rg	31.55 Å
shape_rg	30.86 Å
total_rg	31.38 Å
total_atoms	6634
n_residues	862
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	117.7 Å
rg_real	31.43 Å
rg_real_error	1.36 Å
i0_real	1.4280e+08
i0_real_error	2.3340e+06
rg_reciprocal	31.36 Å
i0_reciprocal	142700000.0000
total_estimate	0.8046
solution_quality	GOOD a GOOD solution
n_peaks	3
r_peak_primary	34.6 Å
skewness	0.584
kurtosis	0.210
angular_range	— – 0.2550 Å⁻¹
current_alpha	0.0000
highest_alpha	36980000.0000
n_real_points	52
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.567; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.779; Smooth: 0.974

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	BIOTIN CARBOXYLASE
formula_weight	49386.7 kDa
ec_number	6.3.4.14
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	7197

MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDPNTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEKKLGLQEK

Source

organism	Escherichia coli
ncbi_taxonomy_id	562
host_organism	Escherichia coli

Entity 2 non-polymer

description	PHOSPHATE ION
formula_weight	95.0 kDa
src_method	syn
entity_count	2

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	544

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6. Citations (1)

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length_a	61.700 Å
length_b	95.800 Å
length_c	180.700 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

resolution	1.900 Å
resolution_low	30.000 Å
r_factor	0.1820
r_work	0.1800
r_free	0.2380

fit	/app/data/saxs_computation/dv/1dv1/1dv1.fit
pddf	/app/data/pr_computation/dv/1dv1/1dv1.pr.out
profile	/app/data/saxs_computation/dv/1dv1/1dv1.dat

STRUCTURE OF BIOTIN CARBOXYLASE (APO)

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction