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1dz8

oxygen complex of p450cam from pseudomonas putida

Method: X-RAY DIFFRACTION D_max: 109.3 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1dz8
deposition_date	2000-02-18
title	oxygen complex of p450cam from pseudomonas putida
keywords	OXIDOREDUCTASE, MONO-OXYGENASE, HEME; OXIDOREDUCTASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	33.68 Å
rg_electron	33.25 Å
i0	132450000.00
molecular_weight	92847.0 kDa
excluded_volume	116330 Å³
envelope_volume	140390 Å³
shell_volume	36501 Å³
envelope_diameter	118.2 Å
shell_rg	38.43 Å
envelope_rg	33.15 Å
shape_rg	33.28 Å
total_rg	33.56 Å
total_atoms	6529
n_residues	809
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	109.3 Å
rg_real	33.84 Å
rg_real_error	0.97 Å
i0_real	1.3240e+08
i0_real_error	2.1730e+06
rg_reciprocal	33.74 Å
i0_reciprocal	132400000.0000
total_estimate	0.8488
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	30.2 Å
skewness	0.446
kurtosis	-0.502
angular_range	— – 0.2350 Å⁻¹
current_alpha	0.0000
highest_alpha	39490000.0000
n_real_points	48
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.844; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.854; Smooth: 0.646

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4. Crystallography & Experiment

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5. Entities & Polymer Info (7)

Entity 1 polymer

description	CYTOCHROME P450-CAM
formula_weight	46587.9 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	7207

TTETIQSNANLAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRHFSSECPFIPREAGEAYDFIPTSMDPPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFMLLAGLPEEDIPHLKYLTDQMTRPDGSMTFAEAKEALYDYLIPIIEQRRQKPGTDAISIVANGQVNGRPITSDEAKRMCGLLLVGGLDTVVNFLSFSMEFLAKSPEHRQELIQRPERIPAACEELLRRFSLVADGRILTSDYEFHGVQLKKGDQILLPQMLSGLDERENACPMHVDFSRQKVSHTTFGHGSHLCLGQHLARREIIVTLKEWLTRIPDFSIAPGAQIQHKSGIVSGVQALPLVWDPATTKAV

Source

organism	PSEUDOMONAS PUTIDA
ncbi_taxonomy_id	303
host_organism	ESCHERICHIA COLI

Entity 2 non-polymer

description	PROTOPORPHYRIN IX CONTAINING FE
formula_weight	616.5 kDa
src_method	syn
entity_count	2

Entity 3 non-polymer

description	OXYGEN MOLECULE
formula_weight	32.0 kDa
src_method	syn
entity_count	1

Entity 4 non-polymer

description	CAMPHOR
formula_weight	152.2 kDa
src_method	syn
entity_count	2

Entity 5 non-polymer

description	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
formula_weight	122.1 kDa
src_method	syn
entity_count	1

Entity 6 non-polymer

description	POTASSIUM ION
formula_weight	39.1 kDa
src_method	syn
entity_count	3

Entity 7 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	650

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6. Citations (3)

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length_a	67.000 Å
length_b	61.800 Å
length_c	94.700 Å
angle_alpha	90.00 °
angle_beta	90.20 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	1.900 Å
resolution_low	19.000 Å
r_factor	—
r_work	0.1740
r_free	0.2480

fit	/app/data/saxs_computation/dz/1dz8/1dz8.fit
pddf	/app/data/pr_computation/dz/1dz8/1dz8.pr.out
profile	/app/data/saxs_computation/dz/1dz8/1dz8.dat