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1j9v

Solution structure of a lactam analogue (DabD) of HIV gp41 600-612 loop.

Method: SOLUTION NMR
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1. Protein Identity and Related Structures Protein Identity & Related Structures

DabD (Ace)IWG(DAB)SGKLIDTTA ANALOGUE OF HIV GP41

OrganismNot specified

UniProt P12488

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein monomer Monomer Protein 1 No other associated polymer Consistent with protein count

Other States of the Same Protein in the Database

Monomer
1im7 1j8n 1j8z 1j9v 1jaa 1jar 1jc8 1jcp

8 assemblies

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex

None

View Construct and Data Evidence
UniProt name ENV_HV1BN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 2–14； UniProt 591–603

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id1j9v
Deposition date deposition_date2001-05-29
Structure title titleSolution structure of a lactam analogue (DabD) of HIV gp41 600-612 loop.
Keywords keywordslactam peptide, lactam bond, HIV, gp41, cyclic peptide, Viral protein; VIRAL PROTEIN
Experimental Method methodSOLUTION NMR
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

1j9v__assembly_1__model_6

Assembly 1 · Model 6 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

1j9v__assembly_1__model_6 | I(q)

10-2 10-1 104 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

1j9v__assembly_1__model_6 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）7.63 Å
Rg (electron density)6.58 Å
Total Rg8.51 Å
Atom count199
Residues12
Excluded volume1786 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 1j9v__assembly_1__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 2 1j9v__assembly_1__model_2 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 3 1j9v__assembly_1__model_3 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 4 1j9v__assembly_1__model_4 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 5 1j9v__assembly_1__model_5 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 6 1j9v__assembly_1__model_6 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 7 1j9v__assembly_1__model_7 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 8 1j9v__assembly_1__model_8 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 9 1j9v__assembly_1__model_9 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 10 1j9v__assembly_1__model_10 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 11 1j9v__assembly_1__model_11 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 12 1j9v__assembly_1__model_12 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 13 1j9v__assembly_1__model_13 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 14 1j9v__assembly_1__model_14 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 15 1j9v__assembly_1__model_15 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 16 1j9v__assembly_1__model_16 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 17 1j9v__assembly_1__model_17 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 18 1j9v__assembly_1__model_18 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 19 1j9v__assembly_1__model_19 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 20 1j9v__assembly_1__model_20 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 21 1j9v__assembly_1__model_21 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 22 1j9v__assembly_1__model_22 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 23 1j9v__assembly_1__model_23 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 24 1j9v__assembly_1__model_24 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 25 1j9v__assembly_1__model_25 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 26 1j9v__assembly_1__model_26 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 27 1j9v__assembly_1__model_27 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 28 1j9v__assembly_1__model_28 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 29 1j9v__assembly_1__model_29 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 30 1j9v__assembly_1__model_30 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 31 1j9v__assembly_1__model_31 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 32 1j9v__assembly_1__model_32 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 33 1j9v__assembly_1__model_33 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 34 1j9v__assembly_1__model_34 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 35 1j9v__assembly_1__model_35 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 36 1j9v__assembly_1__model_36 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 37 1j9v__assembly_1__model_37 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 38 1j9v__assembly_1__model_38 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 39 1j9v__assembly_1__model_39 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 40 1j9v__assembly_1__model_40 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 41 1j9v__assembly_1__model_41 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 42 1j9v__assembly_1__model_42 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 43 1j9v__assembly_1__model_43 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 44 1j9v__assembly_1__model_44 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 45 1j9v__assembly_1__model_45 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 46 1j9v__assembly_1__model_46 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 47 1j9v__assembly_1__model_47 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 48 1j9v__assembly_1__model_48 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
1 49 1j9v__assembly_1__model_49 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (1)

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6. Fold Classification (SCOP + CATH) 1 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd1j9va_
Class classj — Peptides
Fold Fold foldj.85 — HIV-1 gp41 fragments
Superfamily Superfamily superfamilyj.85.1 — HIV-1 gp41 fragments
Family Family familyj.85.1.1 — HIV-1 gp41 fragments
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7. Citations (1)