Escherichia coli
| Assembly | Physical composition | Protein state | Molecular copy count | Associated components | Data consistency |
|---|---|---|---|---|---|
| 1 | Protein monomer | Monomer | Protein 1 | CYTIDINE-5'-TRIPHOSPHATE × 1 | Consistent with protein count |
| UniProt name | DPO1_ECOLI |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A； PDBConstruct 1–605； UniProt 324–928 |
The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.
| Entry ID entry_id | 1kfd |
| Deposition date deposition_date | 1993-09-23 |
| Structure title title | CRYSTAL STRUCTURES OF THE KLENOW FRAGMENT OF DNA POLYMERASE I COMPLEXED WITH DEOXYNUCLEOSIDE TRIPHOSPHATE AND PYROPHOSPHATE |
| Keywords keywords | NUCLEOTIDYLTRANSFERASE; NUCLEOTIDYLTRANSFERASE |
| Experimental Method method | X-RAY DIFFRACTION |
This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.
Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
| Rg（Guinier） | 27.31 Å |
| Rg (electron density) | 26.71 Å |
| Total Rg | 27.42 Å |
| Atom count | 4479 |
| Residues | 560 |
| Excluded volume | 79680 ų |
| Maximum q | 0.500 Å⁻¹ |
| Domain ID domain_id | d1kfda1 |
| Class class | c — Alpha and beta proteins (a/b) |
| Fold Fold fold | c.55 — Ribonuclease H-like motif |
| Superfamily Superfamily superfamily | c.55.3 — Ribonuclease H-like |
| Family Family family | c.55.3.5 — DnaQ-like 3'-5' exonuclease |
| Domain ID domain_id | d1kfda2 |
| Class class | e — Multi-domain proteins (alpha and beta) |
| Fold Fold fold | e.8 — DNA/RNA polymerases |
| Superfamily Superfamily superfamily | e.8.1 — DNA/RNA polymerases |
| Family Family family | e.8.1.1 — DNA polymerase I |
| Domain ID domain_id | 1kfdA01 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 30 — 2-Layer Sandwich |
| Topology topology | 420 — Nucleotidyltransferase; domain 5 |
| Homologous superfamily homologous superfamily | 10 — Ribonuclease H-like superfamily/Ribonuclease H |
| Domain ID domain_id | 1kfdA02 |
| Class class | 1 — Mainly Alpha |
| Architecture architecture | 20 — Up-down Bundle |
| Topology topology | 1060 — Taq DNA Polymerase; Chain T, domain 4 |
| Homologous superfamily homologous superfamily | 10 — Taq DNA Polymerase; Chain T, domain 4 |
| Domain ID domain_id | 1kfdA03 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 30 — 2-Layer Sandwich |
| Topology topology | 70 — Alpha-Beta Plaits |
| Homologous superfamily homologous superfamily | 370 — |
| Domain ID domain_id | 1kfdA04 |
| Class class | 1 — Mainly Alpha |
| Architecture architecture | 10 — Orthogonal Bundle |
| Topology topology | 150 — DNA polymerase; domain 1 |
| Homologous superfamily homologous superfamily | 20 — 5' to 3' exonuclease, C-terminal subdomain |