1oed

STRUCTURE OF ACETYLCHOLINE RECEPTOR PORE FROM ELECTRON IMAGES

Method: ELECTRON MICROSCOPY Dmax: 84.7 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Acetylcholine receptor subunit alpha

OrganismNot specified

UniProt P02711

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 5 PDB declaration: pentameric(5) Consistent with protein copy count Chain A; UniProt 235–461 Chain D; UniProt 235–461 Fragment:MEMBRANE-SPANNING DOMAIN, RESIDUES 235-461 Acetylcholine receptor beta subunit × 1 (Q6S3I0) Acetylcholine receptor delta subunit × 1 (Q6S3H8) Acetylcholine receptor gamma subunit × 1 (Q6S3H9) ELECTRON MICROSCOPY cryo-EM buffer:SODIUM CACODYLATE;pH 6.8 cryo-EM vitrification conditions:LIQUID ETHANE Resolution 4.00 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

11 other PDB entries and 11 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ACHA_TORMA
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–227; UniProt 235–461 Author chain D; PDBConstruct 1–227; UniProt 235–461

Acetylcholine receptor beta subunit

OrganismNot specified

UniProt Q6S3I0

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 5 PDB declaration: pentameric(5) Consistent with protein copy count Chain B; UniProt 241–490 Fragment:MEMBRANE-SPANNING DOMAIN, RESIDUES 241-490 Acetylcholine receptor subunit alpha × 2 (P02711) Acetylcholine receptor delta subunit × 1 (Q6S3H8) Acetylcholine receptor gamma subunit × 1 (Q6S3H9) ELECTRON MICROSCOPY cryo-EM buffer:SODIUM CACODYLATE;pH 6.8 cryo-EM vitrification conditions:LIQUID ETHANE Resolution 4.00 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

9 other PDB entries and 9 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q6S3I0_TORMA
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–250; UniProt 241–490

Acetylcholine receptor delta subunit

OrganismNot specified

UniProt Q6S3H8

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 5 PDB declaration: pentameric(5) Consistent with protein copy count Chain C; UniProt 246–505 Fragment:MEMBRANE-SPANNING DOMAIN, RESIDUES 246-505 Acetylcholine receptor subunit alpha × 2 (P02711) Acetylcholine receptor beta subunit × 1 (Q6S3I0) Acetylcholine receptor gamma subunit × 1 (Q6S3H9) ELECTRON MICROSCOPY cryo-EM buffer:SODIUM CACODYLATE;pH 6.8 cryo-EM vitrification conditions:LIQUID ETHANE Resolution 4.00 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

9 other PDB entries and 9 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q6S3H8_TORMA
Isoform
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–260; UniProt 246–505

Acetylcholine receptor gamma subunit

OrganismNot specified

UniProt Q6S3H9

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 5 PDB declaration: pentameric(5) Consistent with protein copy count Chain E; UniProt 235–494 Fragment:MEMBRANE-SPANNING DOMAIN, RESIDUES 236-495 Acetylcholine receptor subunit alpha × 2 (P02711) Acetylcholine receptor beta subunit × 1 (Q6S3I0) Acetylcholine receptor delta subunit × 1 (Q6S3H8) ELECTRON MICROSCOPY cryo-EM buffer:SODIUM CACODYLATE;pH 6.8 cryo-EM vitrification conditions:LIQUID ETHANE Resolution 4.00 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

9 other PDB entries and 9 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q6S3H9_TORMA
Isoform
PDB entities 4
Chains and sequence ranges Author chain E; PDBConstruct 1–260; UniProt 235–494

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1oed

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1oed
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1oed
Deposition date deposition_date2003-03-24
Structure title titleSTRUCTURE OF ACETYLCHOLINE RECEPTOR PORE FROM ELECTRON IMAGES
Keywords keywordsION CHANNEL/RECEPTOR, ION CHANNEL, TUBULAR CRYSTAL, ACETYLCHOLINE RECEPTOR, TRANSMEMBRANE, ION CHANNEL-RECEPTOR complex; ION CHANNEL/RECEPTOR
Experimental Method methodELECTRON MICROSCOPY

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier27.31
Radius of gyration Rg (electron density) rg_electron25.91
Forward intensity I(0) i058283200.00
Molecular weight molecular_weight70009.0 kDa
Excluded volume excluded_volume92317 ų
Envelope volume envelope_volume114340 ų
Hydration-shell volume shell_volume35796 ų
Envelope diameter envelope_diameter88.3
Shell Rg shell_rg34.12
Envelope Rg envelope_rg25.98
Shape Rg shape_rg25.92
Total Rg total_rg26.91
Total atoms total_atoms4926
Residues n_residues636
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax84.7
Rg (real space) rg_real27.12
Rg uncertainty (real space) rg_real_error0.38
I(0) (real space) i0_real5.8280e+07
I(0) uncertainty (real space) i0_real_error6.3900e+05
Rg (reciprocal space) rg_reciprocal27.18
I(0) (reciprocal space) i0_reciprocal58290000.0000
Solution quality estimate total_estimate0.8889
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary36.5
Skewness Skewness skewness0.147
Kurtosis Kurtosis kurtosis-0.328
Angular range angular_range— – 0.2900 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha14500000.0000
Real-space data points n_real_points59
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.868; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.976; Smooth: 0.971

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

7. Fold Classification (SCOP + CATH) 10 domains

SCOP 2.08 (5 domains)

Domain ID domain_idd1oeda_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.36 — Neurotransmitter-gated ion-channel transmembrane pore
Superfamily Superfamily superfamilyf.36.1 — Neurotransmitter-gated ion-channel transmembrane pore
Family Family familyf.36.1.1 — Neurotransmitter-gated ion-channel transmembrane pore
Domain ID domain_idd1oedb_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.36 — Neurotransmitter-gated ion-channel transmembrane pore
Superfamily Superfamily superfamilyf.36.1 — Neurotransmitter-gated ion-channel transmembrane pore
Family Family familyf.36.1.1 — Neurotransmitter-gated ion-channel transmembrane pore
Domain ID domain_idd1oedc_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.36 — Neurotransmitter-gated ion-channel transmembrane pore
Superfamily Superfamily superfamilyf.36.1 — Neurotransmitter-gated ion-channel transmembrane pore
Family Family familyf.36.1.1 — Neurotransmitter-gated ion-channel transmembrane pore
Domain ID domain_idd1oedd_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.36 — Neurotransmitter-gated ion-channel transmembrane pore
Superfamily Superfamily superfamilyf.36.1 — Neurotransmitter-gated ion-channel transmembrane pore
Family Family familyf.36.1.1 — Neurotransmitter-gated ion-channel transmembrane pore
Domain ID domain_idd1oede_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.36 — Neurotransmitter-gated ion-channel transmembrane pore
Superfamily Superfamily superfamilyf.36.1 — Neurotransmitter-gated ion-channel transmembrane pore
Family Family familyf.36.1.1 — Neurotransmitter-gated ion-channel transmembrane pore

CATH v4.4 (5 domains)

Domain ID domain_id1oedA00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1
Homologous superfamily homologous superfamily390 — Neurotransmitter-gated ion-channel transmembrane domain
Domain ID domain_id1oedB00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1
Homologous superfamily homologous superfamily390 — Neurotransmitter-gated ion-channel transmembrane domain
Domain ID domain_id1oedC00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1
Homologous superfamily homologous superfamily390 — Neurotransmitter-gated ion-channel transmembrane domain
Domain ID domain_id1oedD00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1
Homologous superfamily homologous superfamily390 — Neurotransmitter-gated ion-channel transmembrane domain
Domain ID domain_id1oedE00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1
Homologous superfamily homologous superfamily390 — Neurotransmitter-gated ion-channel transmembrane domain

8. Citations (4)

9. Files and Curves (10)