4boo

The structure and super-organization of acetylcholine receptor-rapsyn complexes class C

Method: ELECTRON MICROSCOPY Dmax: 153.1 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

ACETYLCHOLINE RECEPTOR SUBUNIT ALPHA

OrganismNot specified

UniProt P02711

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 5 PDB declaration: pentameric(5) Consistent with protein copy count Chain A; UniProt 1–461 Chain D; UniProt 1–461 Not recorded ACETYLCHOLINE RECEPTOR BETA SUBUNIT × 1 (Q6S3I0) ACETYLCHOLINE RECEPTOR DELTA SUBUNIT × 1 (Q6S3H8) ACETYLCHOLINE RECEPTOR GAMMA SUBUNIT × 1 (Q6S3H9) ELECTRON MICROSCOPY cryo-EM buffer:400 MM NACL, 20 MM PHOSPHATE BUFFER, LEUPEPTIN 0.3 MG/L, PEPSTATIN 1 MG/L;pH 7.4;400 MM NACL, 20 MM PHOSPHATE BUFFER, LEUPEPTIN 0.3 MG/L, PEPSTATIN 1 MG/L cryo-EM vitrification conditions:Cryogen ETHANE;CRYOGEN- ETHANE, HUMIDITY- 90, TEMPERATURE- 78, INSTRUMENT- HOMEMADE PLUNGER, METHOD- BLOT FROM THE CARBON SIDE Resolution 42.00 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

11 other PDB entries and 11 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ACHA_TORMA
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–461; UniProt 1–461 Author chain D; PDBConstruct 1–461; UniProt 1–461

ACETYLCHOLINE RECEPTOR BETA SUBUNIT

OrganismNot specified

UniProt Q6S3I0

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 5 PDB declaration: pentameric(5) Consistent with protein copy count Chain B; UniProt 1–493 Not recorded ACETYLCHOLINE RECEPTOR SUBUNIT ALPHA × 2 (P02711) ACETYLCHOLINE RECEPTOR DELTA SUBUNIT × 1 (Q6S3H8) ACETYLCHOLINE RECEPTOR GAMMA SUBUNIT × 1 (Q6S3H9) ELECTRON MICROSCOPY cryo-EM buffer:400 MM NACL, 20 MM PHOSPHATE BUFFER, LEUPEPTIN 0.3 MG/L, PEPSTATIN 1 MG/L;pH 7.4;400 MM NACL, 20 MM PHOSPHATE BUFFER, LEUPEPTIN 0.3 MG/L, PEPSTATIN 1 MG/L cryo-EM vitrification conditions:Cryogen ETHANE;CRYOGEN- ETHANE, HUMIDITY- 90, TEMPERATURE- 78, INSTRUMENT- HOMEMADE PLUNGER, METHOD- BLOT FROM THE CARBON SIDE Resolution 42.00 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

9 other PDB entries and 9 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q6S3I0_TORMA
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–493; UniProt 1–493

ACETYLCHOLINE RECEPTOR DELTA SUBUNIT

OrganismNot specified

UniProt Q6S3H8

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 5 PDB declaration: pentameric(5) Consistent with protein copy count Chain C; UniProt 1–522 Not recorded ACETYLCHOLINE RECEPTOR SUBUNIT ALPHA × 2 (P02711) ACETYLCHOLINE RECEPTOR BETA SUBUNIT × 1 (Q6S3I0) ACETYLCHOLINE RECEPTOR GAMMA SUBUNIT × 1 (Q6S3H9) ELECTRON MICROSCOPY cryo-EM buffer:400 MM NACL, 20 MM PHOSPHATE BUFFER, LEUPEPTIN 0.3 MG/L, PEPSTATIN 1 MG/L;pH 7.4;400 MM NACL, 20 MM PHOSPHATE BUFFER, LEUPEPTIN 0.3 MG/L, PEPSTATIN 1 MG/L cryo-EM vitrification conditions:Cryogen ETHANE;CRYOGEN- ETHANE, HUMIDITY- 90, TEMPERATURE- 78, INSTRUMENT- HOMEMADE PLUNGER, METHOD- BLOT FROM THE CARBON SIDE Resolution 42.00 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

9 other PDB entries and 9 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q6S3H8_TORMA
Isoform
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–522; UniProt 1–522

ACETYLCHOLINE RECEPTOR GAMMA SUBUNIT

OrganismNot specified

UniProt Q6S3H9

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 5 PDB declaration: pentameric(5) Consistent with protein copy count Chain E; UniProt 1–505 Not recorded ACETYLCHOLINE RECEPTOR SUBUNIT ALPHA × 2 (P02711) ACETYLCHOLINE RECEPTOR BETA SUBUNIT × 1 (Q6S3I0) ACETYLCHOLINE RECEPTOR DELTA SUBUNIT × 1 (Q6S3H8) ELECTRON MICROSCOPY cryo-EM buffer:400 MM NACL, 20 MM PHOSPHATE BUFFER, LEUPEPTIN 0.3 MG/L, PEPSTATIN 1 MG/L;pH 7.4;400 MM NACL, 20 MM PHOSPHATE BUFFER, LEUPEPTIN 0.3 MG/L, PEPSTATIN 1 MG/L cryo-EM vitrification conditions:Cryogen ETHANE;CRYOGEN- ETHANE, HUMIDITY- 90, TEMPERATURE- 78, INSTRUMENT- HOMEMADE PLUNGER, METHOD- BLOT FROM THE CARBON SIDE Resolution 42.00 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

9 other PDB entries and 9 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q6S3H9_TORMA
Isoform
PDB entities 4
Chains and sequence ranges Author chain E; PDBConstruct 1–505; UniProt 1–505

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 4boo

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 4boo
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2. Structure Basics 2. Structure Basics

Entry ID entry_id4boo
Deposition date deposition_date2013-05-21
Structure title titleThe structure and super-organization of acetylcholine receptor-rapsyn complexes class C
Keywords keywordsTRANSPORT PROTEIN, NEUROTRANSMITTER RECEPTOR, CLUSTERING, SYNAPSE, NEUROMUSCULAR JUNCTION, NICOTINIC, 43K; TRANSPORT PROTEIN
Experimental Method methodELECTRON MICROSCOPY

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier43.92
Radius of gyration Rg (electron density) rg_electron43.21
Forward intensity I(0) i0586490000.00
Molecular weight molecular_weight211500.0 kDa
Excluded volume excluded_volume269810 ų
Envelope volume envelope_volume375690 ų
Hydration-shell volume shell_volume73470 ų
Envelope diameter envelope_diameter162.9
Shell Rg shell_rg47.45
Envelope Rg envelope_rg43.09
Shape Rg shape_rg43.22
Total Rg total_rg43.42
Total atoms total_atoms14924
Residues n_residues1851
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax153.1
Rg (real space) rg_real44.12
Rg uncertainty (real space) rg_real_error1.60
I(0) (real space) i0_real5.8650e+08
I(0) uncertainty (real space) i0_real_error1.1890e+07
Rg (reciprocal space) rg_reciprocal43.92
I(0) (reciprocal space) i0_reciprocal586400000.0000
Solution quality estimate total_estimate0.8255
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary51.0
Skewness Skewness skewness0.591
Kurtosis Kurtosis kurtosis0.152
Angular range angular_range— – 0.1800 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha77390000.0000
Real-space data points n_real_points37
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.661; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.994; Smooth: 0.750

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

8. Citations (1)

9. Files and Curves (10)