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1pdm

Fitting of gp8 structure into the cryoEM reconstruction of the bacteriophage T4 baseplate

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Baseplate structural protein Gp8

OrganismNot specified

UniProt P19062

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 12 No other associated polymer Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer
1n7z 1n7z 1n80 1n80 1n8b 1n8b

6 assemblies

Homotetramer
1n80

1 assemblies

Other homooligomers
1pdm

1 assemblies

Heteromeric or nucleic-acid complex
1tja 1tja 1tja 5hx2 5hx2 5hx2 5iv5 5iv7

8 assemblies

View Construct and Data Evidence
UniProt name VG08_BPT4
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 1–334； UniProt 1–334 Author chain B； PDBConstruct 1–334； UniProt 1–334 Author chain C； PDBConstruct 1–334； UniProt 1–334 Author chain D； PDBConstruct 1–334； UniProt 1–334 Author chain E； PDBConstruct 1–334； UniProt 1–334 Author chain F； PDBConstruct 1–334； UniProt 1–334 Author chain G； PDBConstruct 1–334； UniProt 1–334 Author chain H； PDBConstruct 1–334； UniProt 1–334 Author chain I； PDBConstruct 1–334； UniProt 1–334 Author chain J； PDBConstruct 1–334； UniProt 1–334 Author chain K； PDBConstruct 1–334； UniProt 1–334 Author chain L； PDBConstruct 1–334； UniProt 1–334

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id1pdm
Deposition date deposition_date2003-05-19
Structure title titleFitting of gp8 structure into the cryoEM reconstruction of the bacteriophage T4 baseplate
Keywords keywordsStructural protein; STRUCTURAL PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

1pdm__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

1pdm__assembly_1__model_1 | I(q)

10-2 10-1 105 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

1pdm__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）0.00 Å
Rg (electron density)136.00 Å
Total Rg136.00 Å
Atom count0
Residues0
Excluded volume543650 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 1pdm__assembly_1__model_1 dodecameric （12） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (1)

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6. Fold Classification (SCOP + CATH) 12 domains

SCOP 2.08 (12 domains)

Domain ID domain_idd1pdma_
Class classi — Low resolution protein structures
Fold Fold foldi.19 — Bacteriophage T4 3D cryo-EM reconstruction
Superfamily Superfamily superfamilyi.19.1 — Bacteriophage T4 3D cryo-EM reconstruction
Family Family familyi.19.1.1 — Bacteriophage T4 3D cryo-EM reconstruction
Domain ID domain_idd1pdmb_
Class classi — Low resolution protein structures
Fold Fold foldi.19 — Bacteriophage T4 3D cryo-EM reconstruction
Superfamily Superfamily superfamilyi.19.1 — Bacteriophage T4 3D cryo-EM reconstruction
Family Family familyi.19.1.1 — Bacteriophage T4 3D cryo-EM reconstruction
Domain ID domain_idd1pdmc_
Class classi — Low resolution protein structures
Fold Fold foldi.19 — Bacteriophage T4 3D cryo-EM reconstruction
Superfamily Superfamily superfamilyi.19.1 — Bacteriophage T4 3D cryo-EM reconstruction
Family Family familyi.19.1.1 — Bacteriophage T4 3D cryo-EM reconstruction
Domain ID domain_idd1pdmd_
Class classi — Low resolution protein structures
Fold Fold foldi.19 — Bacteriophage T4 3D cryo-EM reconstruction
Superfamily Superfamily superfamilyi.19.1 — Bacteriophage T4 3D cryo-EM reconstruction
Family Family familyi.19.1.1 — Bacteriophage T4 3D cryo-EM reconstruction
Domain ID domain_idd1pdme_
Class classi — Low resolution protein structures
Fold Fold foldi.19 — Bacteriophage T4 3D cryo-EM reconstruction
Superfamily Superfamily superfamilyi.19.1 — Bacteriophage T4 3D cryo-EM reconstruction
Family Family familyi.19.1.1 — Bacteriophage T4 3D cryo-EM reconstruction
Domain ID domain_idd1pdmf_
Class classi — Low resolution protein structures
Fold Fold foldi.19 — Bacteriophage T4 3D cryo-EM reconstruction
Superfamily Superfamily superfamilyi.19.1 — Bacteriophage T4 3D cryo-EM reconstruction
Family Family familyi.19.1.1 — Bacteriophage T4 3D cryo-EM reconstruction
Domain ID domain_idd1pdmg_
Class classi — Low resolution protein structures
Fold Fold foldi.19 — Bacteriophage T4 3D cryo-EM reconstruction
Superfamily Superfamily superfamilyi.19.1 — Bacteriophage T4 3D cryo-EM reconstruction
Family Family familyi.19.1.1 — Bacteriophage T4 3D cryo-EM reconstruction
Domain ID domain_idd1pdmh_
Class classi — Low resolution protein structures
Fold Fold foldi.19 — Bacteriophage T4 3D cryo-EM reconstruction
Superfamily Superfamily superfamilyi.19.1 — Bacteriophage T4 3D cryo-EM reconstruction
Family Family familyi.19.1.1 — Bacteriophage T4 3D cryo-EM reconstruction
Domain ID domain_idd1pdmi_
Class classi — Low resolution protein structures
Fold Fold foldi.19 — Bacteriophage T4 3D cryo-EM reconstruction
Superfamily Superfamily superfamilyi.19.1 — Bacteriophage T4 3D cryo-EM reconstruction
Family Family familyi.19.1.1 — Bacteriophage T4 3D cryo-EM reconstruction
Domain ID domain_idd1pdmj_
Class classi — Low resolution protein structures
Fold Fold foldi.19 — Bacteriophage T4 3D cryo-EM reconstruction
Superfamily Superfamily superfamilyi.19.1 — Bacteriophage T4 3D cryo-EM reconstruction
Family Family familyi.19.1.1 — Bacteriophage T4 3D cryo-EM reconstruction
Domain ID domain_idd1pdmk_
Class classi — Low resolution protein structures
Fold Fold foldi.19 — Bacteriophage T4 3D cryo-EM reconstruction
Superfamily Superfamily superfamilyi.19.1 — Bacteriophage T4 3D cryo-EM reconstruction
Family Family familyi.19.1.1 — Bacteriophage T4 3D cryo-EM reconstruction
Domain ID domain_idd1pdml_
Class classi — Low resolution protein structures
Fold Fold foldi.19 — Bacteriophage T4 3D cryo-EM reconstruction
Superfamily Superfamily superfamilyi.19.1 — Bacteriophage T4 3D cryo-EM reconstruction
Family Family familyi.19.1.1 — Bacteriophage T4 3D cryo-EM reconstruction
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7. Citations (2)