1tja
Fitting of gp8, gp9, and gp11 into the cryo-EM reconstruction of the bacteriophage T4 contracted tail
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 1tja |
| 沉积日期 deposition_date | 2004-06-03 |
| 结构标题 title | Fitting of gp8, gp9, and gp11 into the cryo-EM reconstruction of the bacteriophage T4 contracted tail |
| 关键词 keywords | fitting, docking, cryo-EM, gp8, gp9, gp11, circular symmetry, Viral protein; VIRAL PROTEIN |
| 实验方法 method | ELECTRON MICROSCOPY |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 65.43 Å |
| 回转半径 Rg (电子) rg_electron | 66.09 Å |
| 零角强度 I(0) i0 | 790045000.00 |
| 分子量 molecular_weight | 235440.0 kDa |
| 排除体积 excluded_volume | 286480 ų |
| 包络体积 envelope_volume | 361040 ų |
| 水化壳体积 shell_volume | 49810 ų |
| 包络直径 envelope_diameter | 208.8 Å |
| 壳层 Rg shell_rg | 58.94 Å |
| 包络 Rg envelope_rg | 61.86 Å |
| 形状 Rg shape_rg | 66.14 Å |
| 总 Rg total_rg | 65.96 Å |
| 总原子数 total_atoms | — |
| 残基数 n_residues | — |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 192.8 Å |
| Rg (实空间) rg_real | 66.03 Å |
| Rg 误差 (实空间) rg_real_error | 1.75 Å |
| I(0) (实空间) i0_real | 7.9000e+08 |
| I(0) 误差 (实空间) i0_real_error | 1.6580e+07 |
| Rg (倒空间) rg_reciprocal | 64.79 Å |
| I(0) (倒空间) i0_reciprocal | 788200000.0000 |
| 解质量估计 total_estimate | 0.5330 |
| 解质量评级 solution_quality | REASONABLE a REASONABLE solution |
| P(r) 峰数 n_peaks | 2 |
| 主峰位置 r_peak_primary | 40.2 Å |
| 偏度 Skewness skewness | 0.235 |
| 峰度 Kurtosis kurtosis | -0.962 |
| 角度范围 angular_range | — – 0.1200 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 27560000.0000 |
| 实空间数据点数 n_real_points | 25 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.744; Stabil: 1.000; Sysdev: 0.013; Positv: 1.000; Valcen: 0.654; Smooth: 0.000 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (3)
6. 折叠分类 (SCOP + CATH) 8 domains
SCOP 2.08 (8 domains)
| 结构域编号 domain_id | d1tjaa_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.19 — Bacteriophage T4 3D cryo-EM reconstruction |
| 超家族 Superfamily superfamily | i.19.1 — Bacteriophage T4 3D cryo-EM reconstruction |
| 家族 Family family | i.19.1.1 — Bacteriophage T4 3D cryo-EM reconstruction |
| 结构域编号 domain_id | d1tjab_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.19 — Bacteriophage T4 3D cryo-EM reconstruction |
| 超家族 Superfamily superfamily | i.19.1 — Bacteriophage T4 3D cryo-EM reconstruction |
| 家族 Family family | i.19.1.1 — Bacteriophage T4 3D cryo-EM reconstruction |
| 结构域编号 domain_id | d1tjac_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.19 — Bacteriophage T4 3D cryo-EM reconstruction |
| 超家族 Superfamily superfamily | i.19.1 — Bacteriophage T4 3D cryo-EM reconstruction |
| 家族 Family family | i.19.1.1 — Bacteriophage T4 3D cryo-EM reconstruction |
| 结构域编号 domain_id | d1tjad_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.19 — Bacteriophage T4 3D cryo-EM reconstruction |
| 超家族 Superfamily superfamily | i.19.1 — Bacteriophage T4 3D cryo-EM reconstruction |
| 家族 Family family | i.19.1.1 — Bacteriophage T4 3D cryo-EM reconstruction |
| 结构域编号 domain_id | d1tjae_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.19 — Bacteriophage T4 3D cryo-EM reconstruction |
| 超家族 Superfamily superfamily | i.19.1 — Bacteriophage T4 3D cryo-EM reconstruction |
| 家族 Family family | i.19.1.1 — Bacteriophage T4 3D cryo-EM reconstruction |
| 结构域编号 domain_id | d1tjaf_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.19 — Bacteriophage T4 3D cryo-EM reconstruction |
| 超家族 Superfamily superfamily | i.19.1 — Bacteriophage T4 3D cryo-EM reconstruction |
| 家族 Family family | i.19.1.1 — Bacteriophage T4 3D cryo-EM reconstruction |
| 结构域编号 domain_id | d1tjag_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.19 — Bacteriophage T4 3D cryo-EM reconstruction |
| 超家族 Superfamily superfamily | i.19.1 — Bacteriophage T4 3D cryo-EM reconstruction |
| 家族 Family family | i.19.1.1 — Bacteriophage T4 3D cryo-EM reconstruction |
| 结构域编号 domain_id | d1tjah_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.19 — Bacteriophage T4 3D cryo-EM reconstruction |
| 超家族 Superfamily superfamily | i.19.1 — Bacteriophage T4 3D cryo-EM reconstruction |
| 家族 Family family | i.19.1.1 — Bacteriophage T4 3D cryo-EM reconstruction |