|
1NQE
OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI
Deposited 2003-01-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
21–614(594 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE × 7
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.6;293 K;PEG 3350, magnesium acetate, bis-tris, n-octyl tetraoxyethylene , pH 6.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.00 Å
R-free 0.232
|
|
1NQF
OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI, METHIONINE SUBSTIUTION CONSTRUCT FOR SE-MET SAD PHASING
Deposited 2003-01-21
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
21–614(594 aa)
|
Mutation:W317M, K319M, T321M, W516M, I518M, Y520M
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
MG MAGNESIUM ION × 1
C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.6;293 K;PEG3350, MAGNESIUM ACETATE, BIS-TRIS, N-OCTYL TETRAOXYETHELYENE, tris-(2-carboxyethyl)phosphine hydrochloride , pH 6.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.70 Å
R-free 0.288
|
|
1NQG
OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI, WITH BOUND CALCIUM
Deposited 2003-01-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
21–614(594 aa)
|
Not recorded
|
CA CALCIUM ION × 4
C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.6;293 K;PEG 3350, MAGNESIUM ACETATE, BIS-TRIS, N-OCTYL TETRAOXYETHYLENE, pH 6.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 3.31 Å
R-free 0.259
|
|
1NQH
OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI, WITH BOUND CALCIUM AND CYANOCOBALAMIN (VITAMIN B12) SUBSTRATE
Deposited 2003-01-21
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
21–614(594 aa)
|
Not recorded
|
CA CALCIUM ION × 4
CNC CYANOCOBALAMIN × 1
C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.6;293 K;PEG 3350, MAGNESIUM ACETATE, BIS-TRIS, N-OCTYL TETRAOXYETHYLENE, pH 6.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 3.10 Å
R-free 0.265
|
|
2GSK
Structure of the BtuB:TonB Complex
Deposited 2006-04-26
|
Different construct
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
25–614(590 aa)
|
Not recorded
|
CA CALCIUM ION × 2
CNC CYANOCOBALAMIN × 1
LDA LAURYL DIMETHYLAMINE-N-OXIDE × 4
OCT N-OCTANE × 3
HEX HEXANE × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 5.1;288 K;30% (v/v) PEG 300, 0.1M sodium acetate , pH 5.1, VAPOR DIFFUSION, SITTING DROP, temperature 288K, pH 5.10
|
Resolution 2.10 Å
R-free 0.251
|
|
2GUF
In meso crystal structure of the cobalamin transporter, BtuB
Deposited 2006-04-29
|
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
21–614(594 aa)
|
Not recorded
|
MPG [(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate × 11
FMT FORMIC ACID × 1
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 4
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.95 Å
R-free 0.225
|
|
2YSU
Structure of the complex between BtuB and Colicin E2 receptor binding domain
Deposited 2007-04-04
|
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
21–614(594 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 3.50 Å
R-free 0.315
|
|
3M8B
Crystal structure of spin-labeled BtuB V10R1 in the apo state
Deposited 2010-03-17
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
21–614(594 aa)
|
Mutation:V10R1A
|
C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE × 7
MTN S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate × 1
MG MAGNESIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.6;290 K;2.5% PEG3350,20 mM Bis Tris, 150 mM Magnesium acetate, 10 mM C8E4, pH 6.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 2.44 Å
R-free 0.248
|
|
3M8D
Crystal structure of spin-labeled BtuB V10R1 with bound calcium and cyanocobalamin
Deposited 2010-03-17
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
21–614(594 aa)
|
Mutation:V10R1A
|
CNC CYANOCOBALAMIN × 1
C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE × 6
MTN S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate × 1
CA CALCIUM ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.6;290 K;2.5% PEG3350, 150 mM calcium chloride, 20 mM Bis tris, 10 mM C8E4, pH 6.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 2.44 Å
R-free 0.275
|
|
3RGM
Crystal structure of spin-labeled BtuB T156R1
Deposited 2011-04-08
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
21–614(594 aa)
|
Mutation:T156R1
|
C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE × 6
MG MAGNESIUM ION × 9
MTN S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.6;290 K;3.0% PEG3350, 200 mM magnesium acetate, 10mM C8E4, 20 mM Bis Tris pH 6.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 2.60 Å
R-free 0.254
|
|
3RGN
Crystal structure of spin-labeled BtuB W371R1
Deposited 2011-04-08
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
21–614(594 aa)
|
Mutation:W371R1
|
C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE × 7
MG MAGNESIUM ION × 3
MTN S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.6;290 K;3.0% PEG3350, 200 mM magnesium acetate, 10 mM C8E4, 20 mM Bis Tris pH 6.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
|
Resolution 2.30 Å
R-free 0.250
|
|
7NSU
ColicinE9 intact translocation complex
Deposited 2021-03-08
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain F
21–614(594 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE;3 uL of diluted translocon preparation were applied on freshly glow discharged grids coated with graphene oxide (as described in https://doi.org/10.1038/s41594-019-0355-2); after 30sec waiting grids were blotted for 8-10 using -10 force and plunge frozen in liquid ethane
|
Resolution 4.70 Å
|