2ysu

Structure of the complex between BtuB and Colicin E2 receptor binding domain

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Vitamin B12 transporter btuB

Escherichia coli

UniProt P06129

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 2 Colicin-E2 × 1 (P04419) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name BTUB_ECOLI
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–594; UniProt 21–614

Colicin-E2

Escherichia coli

UniProt P04419

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 2 Vitamin B12 transporter btuB × 1 (P06129) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CEA2_ECOLI
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–135; UniProt 313–447

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id2ysu
Deposition date deposition_date2007-04-04
Structure title titleStructure of the complex between BtuB and Colicin E2 receptor binding domain
Keywords keywordsBETA-BARREL, COILED-COIL, TRANSPORT PROTEIN-HYDROLASE COMPLEX; TRANSPORT PROTEIN/HYDROLASE
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

2ysu__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

2ysu__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

2ysu__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)32.03 Å
Rg (electron density)32.69 Å
Total Rg33.01 Å
Atom count5537
Residues699
Excluded volume96497 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 2ysu__assembly_1__model_1 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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6. Fold Classification (SCOP + CATH) 5 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd2ysua1
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.4 — Transmembrane beta-barrels
Superfamily Superfamily superfamilyf.4.3 — Porins
Family Family familyf.4.3.3 — Ligand-gated protein channel
Domain ID domain_idd2ysub1
Class classh — Coiled coil proteins
Fold Fold foldh.4 — Antiparallel coiled-coil
Superfamily Superfamily superfamilyh.4.9 — Colicin E3 receptor domain
Family Family familyh.4.9.1 — Colicin E3 receptor domain

CATH v4.4 (3 domains)

Domain ID domain_id2ysuA01
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology130 — Ferric Hydroxamate Uptake Protein; Chain A, domain 1
Homologous superfamily homologous superfamily10 — TonB-dependent receptor, plug domain
Domain ID domain_id2ysuA02
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology170 — Maltoporin; Chain A
Homologous superfamily homologous superfamily20 — TonB-dependent receptor, beta-barrel domain
Domain ID domain_id2ysuB00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily620 — Helix Hairpins
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7. Citations (1)