2bip

human p53 core domain mutant M133L-H168R-V203A-N239Y-R249S-N268D

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

CELLULAR TUMOR ANTIGEN P53

HOMO SAPIENS

UniProt P04637

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein monomer Monomer Protein 1 ZINC ION × 1 water × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name P53_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–219; UniProt 94–312

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id2bip
Deposition date deposition_date2005-01-25
Structure title titlehuman p53 core domain mutant M133L-H168R-V203A-N239Y-R249S-N268D
Keywords keywords;ACTIVATOR, ANTI-ONCOGENE, APOPTOSIS, DISEASE MUTATION, DNA-BINDING, DNA-BINDING PROTEIN, LI-FRAUMENI SYNDROME, NUCLEAR PROTEIN, P53 DNA-BINDING DOMAIN, PHOSPHORYLATION, POLYMORPHISM, SECOND-SITE SUPPRESSOR MUTATION, SUPERSTABLE MUTANT, TRANSCRIPTION REGULATION, TUMOR SUPPRESSOR, TRANSFERASE, ACETYLATION, GLYCOPROTEIN METAL-BINDING, ZINC, DNA BINDING PROTEIN ;; DNA BINDING PROTEIN
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

2bip__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

2bip__assembly_1__model_1 | I(q)

10-2 10-1 105 106 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

2bip__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)17.39 Å
Rg (electron density)16.05 Å
Total Rg17.10 Å
Atom count1466
Residues185
Excluded volume25814 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 2bip__assembly_1__model_1 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

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6. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd2bipa_
Class classb — All beta proteins
Fold Fold foldb.2 — Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily Superfamily superfamilyb.2.5 — p53-like transcription factors
Family Family familyb.2.5.2 — p53 DNA-binding domain-like

CATH v4.4 (1 domains)

Domain ID domain_id2bipA00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily720 —
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7. Citations (3)