2c7d
Fitted coordinates for GroEL-ADP7-GroES Cryo-EM complex (EMD-1181)
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 2c7d |
| 沉积日期 deposition_date | 2005-11-22 |
| 结构标题 title | Fitted coordinates for GroEL-ADP7-GroES Cryo-EM complex (EMD-1181) |
| 关键词 keywords | ATP-BINDING, CHAPERONE, ATOMIC STRUCTURE FITTING, CELL CYCLE, CELL DIVISION, CHAPERONIN, NUCLEOTIDE-BINDING, PHOSPHORYLATION; CHAPERONE |
| 实验方法 method | ELECTRON MICROSCOPY |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 68.67 Å |
| 回转半径 Rg (电子) rg_electron | 68.49 Å |
| 零角强度 I(0) i0 | 9185660000.00 |
| 分子量 molecular_weight | 826840.0 kDa |
| 排除体积 excluded_volume | 1042100 ų |
| 包络体积 envelope_volume | 1828000 ų |
| 水化壳体积 shell_volume | 215090 ų |
| 包络直径 envelope_diameter | 213.5 Å |
| 壳层 Rg shell_rg | 77.67 Å |
| 包络 Rg envelope_rg | 64.89 Å |
| 形状 Rg shape_rg | 68.52 Å |
| 总 Rg total_rg | 68.51 Å |
| 总原子数 total_atoms | 57946 |
| 残基数 n_residues | 7987 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 197.4 Å |
| Rg (实空间) rg_real | 68.41 Å |
| Rg 误差 (实空间) rg_real_error | 0.77 Å |
| I(0) (实空间) i0_real | 9.1850e+09 |
| I(0) 误差 (实空间) i0_real_error | 1.5400e+08 |
| Rg (倒空间) rg_reciprocal | 69.46 Å |
| I(0) (倒空间) i0_reciprocal | 9203000000.0000 |
| 解质量估计 total_estimate | 0.8273 |
| 解质量评级 solution_quality | GOOD a GOOD solution |
| P(r) 峰数 n_peaks | 1 |
| 主峰位置 r_peak_primary | 94.4 Å |
| 偏度 Skewness skewness | 0.154 |
| 峰度 Kurtosis kurtosis | -0.251 |
| 角度范围 angular_range | — – 0.1150 Å−1 |
| 当前正则化参数 α current_alpha | 0.0002 |
| 最高正则化参数 α highest_alpha | 3025000000.0000 |
| 实空间数据点数 n_real_points | 24 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.905; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.937; Smooth: 0.100 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (2)
6. 折叠分类 (SCOP + CATH) 7 domains
SCOP 2.08 (7 domains)
| 结构域编号 domain_id | d2c7do1 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.35 — GroES-like |
| 超家族 Superfamily superfamily | b.35.1 — GroES-like |
| 家族 Family family | b.35.1.1 — GroES |
| 结构域编号 domain_id | d2c7dp1 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.35 — GroES-like |
| 超家族 Superfamily superfamily | b.35.1 — GroES-like |
| 家族 Family family | b.35.1.1 — GroES |
| 结构域编号 domain_id | d2c7dq1 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.35 — GroES-like |
| 超家族 Superfamily superfamily | b.35.1 — GroES-like |
| 家族 Family family | b.35.1.1 — GroES |
| 结构域编号 domain_id | d2c7dr1 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.35 — GroES-like |
| 超家族 Superfamily superfamily | b.35.1 — GroES-like |
| 家族 Family family | b.35.1.1 — GroES |
| 结构域编号 domain_id | d2c7ds1 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.35 — GroES-like |
| 超家族 Superfamily superfamily | b.35.1 — GroES-like |
| 家族 Family family | b.35.1.1 — GroES |
| 结构域编号 domain_id | d2c7dt1 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.35 — GroES-like |
| 超家族 Superfamily superfamily | b.35.1 — GroES-like |
| 家族 Family family | b.35.1.1 — GroES |
| 结构域编号 domain_id | d2c7du1 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.35 — GroES-like |
| 超家族 Superfamily superfamily | b.35.1 — GroES-like |
| 家族 Family family | b.35.1.1 — GroES |