2q67

Crystal Structure of Nak channel D66A mutant

Method: X-RAY DIFFRACTION Dmax: 67.0 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Potassium channel protein

Bacillus cereus

UniProt Q81HW2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain A; UniProt 1–110 Chain B; UniProt 1–110 Mutation:D66A NA SODIUM ION × 2 CA CALCIUM ION × 4 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;pH 8;298 K;200 mM CaCl2, 100 mM Tris-HCl, 37-42% PEG400, 4% t-Butanol, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K Resolution 2.30 Å R-free 0.266

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

44 other PDB entries and 82 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q81HW2_BACCR
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–110; UniProt 1–110 Author chain B; PDBConstruct 1–110; UniProt 1–110

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 2q67

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 2q67
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2. Structure Basics 2. Structure Basics

Entry ID entry_id2q67
Deposition date deposition_date2007-06-04
Structure title titleCrystal Structure of Nak channel D66A mutant
Keywords keywordsINVERTED TEEPEE, HELIX BUNDLE, TETRAMER, CENTRAL CAVITY, ION BINDING, METAL TRANSPORT, MEMBRANE PROTEIN; METAL TRANSPORT, MEMBRANE PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier20.63
Radius of gyration Rg (electron density) rg_electron19.69
Forward intensity I(0) i07358960.00
Molecular weight molecular_weight23236.0 kDa
Excluded volume excluded_volume30545 ų
Envelope volume envelope_volume36580 ų
Hydration-shell volume shell_volume16389 ų
Envelope diameter envelope_diameter69.5
Shell Rg shell_rg24.92
Envelope Rg envelope_rg19.84
Shape Rg shape_rg19.64
Total Rg total_rg20.81
Total atoms total_atoms1643
Residues n_residues207
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax67.0
Rg (real space) rg_real20.60
Rg uncertainty (real space) rg_real_error0.55
I(0) (real space) i0_real7.3590e+06
I(0) uncertainty (real space) i0_real_error9.3700e+04
Rg (reciprocal space) rg_reciprocal20.61
I(0) (reciprocal space) i0_reciprocal7359000.0000
Solution quality estimate total_estimate0.8203
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary28.2
Skewness Skewness skewness0.198
Kurtosis Kurtosis kurtosis-0.525
Angular range angular_range— – 0.3850 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha841300.0000
Real-space data points n_real_points70
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.896; Stabil: 0.998; Sysdev: 1.000; Positv: 1.000; Valcen: 0.976; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

7. Fold Classification (SCOP + CATH) 2 domains

CATH v4.4 (2 domains)

Domain ID domain_id2q67A00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70
Domain ID domain_id2q67B00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70

8. Citations (1)

9. Files and Curves (10)