8a35

NaK C-DI mutant with Rb+ and Na+

Method: X-RAY DIFFRACTION Dmax: 73.9 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Potassium channel protein

Bacillus cereus ATCC 14579

UniProt Q81HW2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain A; UniProt 19–110 Mutation:D66C G67- N68D F69I RB RUBIDIUM ION × 8 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 8 NA SODIUM ION × 8 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;pH 7.5;293 K;100 mM HEPES (NaOH) pH 7.5, 5% PEG 4000, 30% MPD (2-Methyl-2,4-pentanediol racemate) Resolution 2.05 Å R-free 0.217
2 Protein homooligomer Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain B; UniProt 19–110 Mutation:D66C G67- N68D F69I RB RUBIDIUM ION × 8 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 20 NA SODIUM ION × 8 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;pH 7.5;293 K;100 mM HEPES (NaOH) pH 7.5, 5% PEG 4000, 30% MPD (2-Methyl-2,4-pentanediol racemate) Resolution 2.05 Å R-free 0.217

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

44 other PDB entries and 81 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q81HW2_BACCR
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 2–92; UniProt 19–110 Author chain B; PDBConstruct 2–92; UniProt 19–110

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 8a35

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 8a35
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2. Structure Basics 2. Structure Basics

Entry ID entry_id8a35
Deposition date deposition_date2022-06-07
Structure title titleNaK C-DI mutant with Rb+ and Na+
Keywords keywordsION CHANNEL, PROKARYOTE, MEMBRANE PROTEIN, TRANSPORT PROTEIN; TRANSPORT PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier21.03
Radius of gyration Rg (electron density) rg_electron20.11
Forward intensity I(0) i05562780.00
Molecular weight molecular_weight21124.0 kDa
Excluded volume excluded_volume28115 ų
Envelope volume envelope_volume34613 ų
Hydration-shell volume shell_volume15270 ų
Envelope diameter envelope_diameter75.3
Shell Rg shell_rg25.19
Envelope Rg envelope_rg20.69
Shape Rg shape_rg20.00
Total Rg total_rg21.55
Total atoms total_atoms1571
Residues n_residues181
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax73.9
Rg (real space) rg_real21.06
Rg uncertainty (real space) rg_real_error0.71
I(0) (real space) i0_real5.5630e+06
I(0) uncertainty (real space) i0_real_error7.7720e+04
Rg (reciprocal space) rg_reciprocal21.06
I(0) (reciprocal space) i0_reciprocal5563000.0000
Solution quality estimate total_estimate0.8544
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary30.0
Skewness Skewness skewness0.299
Kurtosis Kurtosis kurtosis-0.250
Angular range angular_range— – 0.3800 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha552500.0000
Real-space data points n_real_points70
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.743; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.883; Smooth: 0.992

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (5)

8. Citations (2)

9. Files and Curves (10)