4ro2

Crystal Structure of CNG mimicking NaK-ETPP mutant cocrystallized with Methylammonium

Method: X-RAY DIFFRACTION Dmax: 90.2 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Potassium channel protein

Bacillus cereus ATCC 14579

UniProt Q81HW2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain A; UniProt 20–110 Chain B; UniProt 20–110 Fragment:residues 20-110 Mutation:D66E, G67T, N68P, F69P 3P8 methylammonium ion × 2 GLY GLYCINE × 34 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 4 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;100mM MES pH 6.5, 25mM Glycine, 40-44% MPD, 100mM MACl, VAPOR DIFFUSION, HANGING DROP Resolution 2.70 Å R-free 0.283
2 Protein homooligomer Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain C; UniProt 20–110 Chain D; UniProt 20–110 Fragment:residues 20-110 Mutation:D66E, G67T, N68P, F69P 3P8 methylammonium ion × 2 GLY GLYCINE × 22 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 4 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;100mM MES pH 6.5, 25mM Glycine, 40-44% MPD, 100mM MACl, VAPOR DIFFUSION, HANGING DROP Resolution 2.70 Å R-free 0.283

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

44 other PDB entries and 81 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q81HW2_BACCR
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 3–92; UniProt 20–110 Author chain B; PDBConstruct 3–92; UniProt 20–110 Author chain C; PDBConstruct 3–92; UniProt 20–110 Author chain D; PDBConstruct 3–92; UniProt 20–110

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 4ro2

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 4ro2
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2. Structure Basics 2. Structure Basics

Entry ID entry_id4ro2
Deposition date deposition_date2014-10-27
Structure title titleCrystal Structure of CNG mimicking NaK-ETPP mutant cocrystallized with Methylammonium
Keywords keywordsAlpha helical membrane protein, ion channel, TRANSPORT PROTEIN; TRANSPORT PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier25.39
Radius of gyration Rg (electron density) rg_electron24.65
Forward intensity I(0) i020803600.00
Molecular weight molecular_weight37982.0 kDa
Excluded volume excluded_volume48929 ų
Envelope volume envelope_volume62501 ų
Hydration-shell volume shell_volume22519 ų
Envelope diameter envelope_diameter100.8
Shell Rg shell_rg29.99
Envelope Rg envelope_rg25.06
Shape Rg shape_rg24.64
Total Rg total_rg25.42
Total atoms total_atoms2696
Residues n_residues346
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax90.2
Rg (real space) rg_real25.52
Rg uncertainty (real space) rg_real_error0.90
I(0) (real space) i0_real2.0800e+07
I(0) uncertainty (real space) i0_real_error3.2950e+05
Rg (reciprocal space) rg_reciprocal25.48
I(0) (reciprocal space) i0_reciprocal20800000.0000
Solution quality estimate total_estimate0.7687
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary30.1
Skewness Skewness skewness0.509
Kurtosis Kurtosis kurtosis-0.059
Angular range angular_range— – 0.3150 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha2483000.0000
Real-space data points n_real_points64
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.731; Stabil: 0.998; Sysdev: 1.000; Positv: 1.000; Valcen: 0.800; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (5)

7. Fold Classification (SCOP + CATH) 4 domains

CATH v4.4 (4 domains)

Domain ID domain_id4ro2A00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70
Domain ID domain_id4ro2B00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70
Domain ID domain_id4ro2C00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70
Domain ID domain_id4ro2D00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70

8. Citations (1)

9. Files and Curves (10)