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1WF6
The third BRCA1 C-terminus (BRCT) domain of Similar to S.pombe rad4+/cut5+ product
Deposited 2004-05-26
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Different construct
Different mutation/modification
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
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Chain A
354–472(119 aa)
Fragment:BRCA1 C-turminus (BRCT) domain
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Not recorded
|
No recorded non-water small molecule
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SOLUTION NMR
NMR measurement conditions
pH 7;298 K;Ionic strength (raw mmCIF value) 220mM;Pressure ambient
NMR sample composition
1.06mM 13C/15N-labeled protein; 20mM d-TRIS, 200mM NaCl, 1mM d-DTT, and 0.02% NaN3 | 90% H2O/10% D2O
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Resolution not provided
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2XNH
Structure and function of the Rad9-binding region of the DNA damage checkpoint adaptor TopBP1
Deposited 2010-08-02
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Different construct
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
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Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
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Chain A
1–287(287 aa)
Fragment:BRCT 0,1 AND 2, RESIDUES 1-287
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Non-standard monomer:Yes (specific site not provided by mmCIF)
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IOD IODIDE ION × 17
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X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.8;0.1M TRIS-HCL PH 6.8, 0.5M KI, 5% (V/V) GLYCEROL, 22.5% (W/V), 10% PEG 3350
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Resolution 2.80 Å
R-free 0.251
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3AL2
Crystal Structure of TopBP1 BRCT7/8
Deposited 2010-07-22
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Different construct
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
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Chain A
1264–1493(230 aa)
Fragment:BRCT7 and BRCT8, UNP residues 1264-1493
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Non-standard monomer:Yes (specific site not provided by mmCIF)
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SO4 SULFATE ION × 2
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X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;Li2SO4, Tris-HCl, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
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Resolution 2.00 Å
R-free 0.204
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3AL3
Crystal Structure of TopBP1 BRCT7/8-BACH1 peptide complex
Deposited 2010-07-22
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Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
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Chain A
1264–1493(230 aa)
Fragment:BRCT7 and BRCT8, UNP residues 1264-1493
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Not recorded
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FMT FORMIC ACID × 1
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X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;298 K;Sodium formate, pH 8, vapor diffusion, hanging drop, temperature 298K
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Resolution 2.15 Å
R-free 0.236
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3JVE
Crystal Structure of the Sixth BRCT Domain of TopBP1
Deposited 2009-09-16
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Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
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Chain A
893–996(104 aa)
Fragment:C-terminus (BRCT) domain
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Not recorded
|
No recorded non-water small molecule
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X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.8;277 K;0.1M Tris-HCl pH 6.8, PEG 2000 MME, VAPOR DIFFUSION, HANGING DROP, temperature 277K
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Resolution 1.34 Å
R-free 0.173
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3OLC
Crystal structure of the N-terminal region of TopBP1
Deposited 2010-08-25
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Different construct
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
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Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
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Chain X
1–290(290 aa)
Fragment:N-terminal domain
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Non-standard monomer:Yes (specific site not provided by mmCIF)
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No recorded non-water small molecule
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X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;289 K;0.1M MES, 11%(w/v) PEG3350, 0.85M sodium nitrate, 2mM EDTA, 4mM DTT, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
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Resolution 2.40 Å
R-free 0.258
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3PD7
Crystal Structure of the Sixth BRCT Domain of Human TopBP1
Deposited 2010-10-22
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Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
893–994(102 aa)
Fragment:Sixth BRCT domain, UNP residues 893-994
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Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.6;295 K;20% PEG 4000, 0.2 M sodium acetate trihydrate, 0.1 M Tris-HCl, pH 6.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K
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Resolution 1.26 Å
R-free 0.144
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3PD7
Crystal Structure of the Sixth BRCT Domain of Human TopBP1
Deposited 2010-10-22
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Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
893–994(102 aa)
Fragment:Sixth BRCT domain, UNP residues 893-994
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Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.6;295 K;20% PEG 4000, 0.2 M sodium acetate trihydrate, 0.1 M Tris-HCl, pH 6.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K
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Resolution 1.26 Å
R-free 0.144
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3UEN
Crystal structure of TopBP1 BRCT4/5 domains
Deposited 2011-10-31
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Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
549–746(198 aa)
Fragment:BRCT domain
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Not recorded
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SCN THIOCYANATE ION × 1
GOL GLYCEROL × 5
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X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;298 K;PEG 3350, NaSCN, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
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Resolution 1.90 Å
R-free 0.224
|
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3UEO
Crystal structure of TopBP1 BRCT4/5 domains in complex with a phospho-peptide
Deposited 2011-10-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
549–746(198 aa)
Fragment:BRCT domain
Chain C
549–746(198 aa)
Fragment:BRCT domain
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;298 K;PEG 10000, Ammonium acetate, bis-Tris, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
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Resolution 2.60 Å
R-free 0.234
|
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3UEO
Crystal structure of TopBP1 BRCT4/5 domains in complex with a phospho-peptide
Deposited 2011-10-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain B
549–746(198 aa)
Fragment:BRCT domain
Chain D
549–746(198 aa)
Fragment:BRCT domain
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;298 K;PEG 10000, Ammonium acetate, bis-Tris, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
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Resolution 2.60 Å
R-free 0.234
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6RML
Crystal structure of TOPBP1 BRCT0,1,2 in complex with a 53BP1 phosphopeptide
Deposited 2019-05-07
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Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
1–290(290 aa)
Chain B
1–290(290 aa)
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Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;287.15 K;10% w/v PEG 20 000
20% v/v PEG MME 550
0.03 M of each ethylene glycol
0.1 M MES/imidazole pH 6.5
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Resolution 2.81 Å
R-free 0.260
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6RMM
Crystal structure of TOPBP1 BRCT4,5 in complex with a 53BP1 phosphopeptide
Deposited 2019-05-07
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Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain A
548–741(194 aa)
Chain B
548–741(194 aa)
Chain C
548–741(194 aa)
Chain D
548–741(194 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;287.15 K;10% w/v PEG 4000, 20% v/v glycerol
0.02 M of each carboxylic acid
0.1 M MOPS/HEPES-Na pH 7.5
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Resolution 3.53 Å
R-free 0.234
|
|
7CMZ
Crystal Structure of BRCT7/8 in Complex with the APS Motif of PHF8
Deposited 2020-07-29
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Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
1264–1493(230 aa)
|
Not recorded
|
K POTASSIUM ION × 1
NA SODIUM ION × 1
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X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;289 K;Sodium phosphate monobasic monohydrate, Potassium phosphate dibasic
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Resolution 1.70 Å
R-free 0.215
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9MAT
TopBP1 BRCT 7-8 Domain
Deposited 2025-03-14
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Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1264–1493(230 aa)
|
Not recorded
|
MLA MALONIC ACID × 1
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X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;0.3 M Sodium malonate pH 7.0, 20% w/v PEG 3350
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Resolution 1.65 Å
R-free 0.207
|
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9MAW
Crystal structure of TOPBP1BRCT7-8 domain in complex with 1-Adamantaneacetic acid
Deposited 2025-03-14
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Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1264–1491(228 aa)
|
Not recorded
|
A1ENP 1-Adamantylacetic acid × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;0.1 M Citric acid, 2.4 M Ammonium sulfate pH 5.0
|
Resolution 2.45 Å
R-free 0.237
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