|
1S7Z
Structure of Ocr from Bacteriophage T7
Deposited 2004-01-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–117(117 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CS CESIUM ION × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.2;291 K;32%PEG-8000, 0.1M Tris-HCl, 0.2M caesium chloride, pH 8.2, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 1.83 Å
R-free 0.239
|
|
1S7Z
Structure of Ocr from Bacteriophage T7
Deposited 2004-01-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–117(117 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CS CESIUM ION × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.2;291 K;32%PEG-8000, 0.1M Tris-HCl, 0.2M caesium chloride, pH 8.2, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 1.83 Å
R-free 0.239
|
|
1S7Z
Structure of Ocr from Bacteriophage T7
Deposited 2004-01-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–117(117 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CS CESIUM ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.2;291 K;32%PEG-8000, 0.1M Tris-HCl, 0.2M caesium chloride, pH 8.2, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 1.83 Å
R-free 0.239
|
|
6R9B
Cryo-EM structure of bacterial RNAP with a DNA mimic protein Ocr from T7 phage
Deposited 2019-04-03
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 7
PDB declaration: heptameric
|
Chain F
1–117(117 aa)
Chain G
1–117(117 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.80 Å
|
|
6R9G
Structural basis of transcription inhibition by the DNA mimic Ocr protein of bacteriophage T7
Deposited 2019-04-03
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 7
PDB declaration: heptameric
|
Chain F
1–117(117 aa)
Chain G
1–117(117 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.70 Å
|
|
7BST
EcoR124I-Ocr in the Intermediate State
Deposited 2020-03-31
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 7
PDB declaration: heptameric
|
Chain F
1–117(117 aa)
Chain G
1–117(117 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.37 Å
|
|
7BTP
EcoR124I-Ocr in Restriction-Alleviation State
Deposited 2020-04-02
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain D
1–117(117 aa)
Chain F
1–117(117 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.01 Å
|
|
7EEW
Crystal structure of the intact MTase from Vibrio vulnificus YJ016 in complex with the DNA-mimicking Ocr protein and the S-adenosyl-L-homocysteine (SAH)
Deposited 2021-03-19
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain B
1–117(117 aa)
|
Not recorded
|
SAH S-ADENOSYL-L-HOMOCYSTEINE × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;20% (w/v) polyethylene glycol 6000, 0.1 M sodium chloride, 0.1 M HEPES pH 8.5
|
Resolution 2.90 Å
R-free 0.293
|
|
8Q56
PglX methyltransferase of Salmonella BREX phage defence system (aka BrxX) bound to inhibitor Ocr
Deposited 2023-08-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain B
1–117(117 aa)
|
Not recorded
|
SAM S-ADENOSYLMETHIONINE × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.2;293 K;0.1 M NaCl, 0.1 M KCl, 14% PEG 4000, 6% MPD
|
Resolution 3.50 Å
R-free 0.292
|
|
8V45
CryoEM structure of AriA-Ocr complex
Deposited 2023-11-28
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 8
PDB declaration: octameric
|
Chain O
1–117(117 aa)
Chain P
1–117(117 aa)
|
Not recorded
|
ATP ADENOSINE-5'-TRIPHOSPHATE × 4
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.63 Å
|
|
8ZEK
Cryo-EM structure of the E. coli BrxX methyltransferase complexed with Ocr
Deposited 2024-05-06
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain B
1–117(117 aa)
Chain C
1–117(117 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.15 Å
|
|
9EX7
Cryo-EM structure of the E. coli BrxX methyltransferase in complex with Ocr
Deposited 2024-04-05
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain C
1–117(117 aa)
Chain D
1–117(117 aa)
|
Not recorded
|
MG MAGNESIUM ION × 2
SAM S-ADENOSYLMETHIONINE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.91 Å
|